| Back to Build/check report for BioC 3.22 experimental data | 
 | 
This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 143/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| frmaExampleData 1.45.0  (landing page) Matthew N. McCall 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| To the developers/maintainers of the frmaExampleData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: frmaExampleData | 
| Version: 1.45.0 | 
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings frmaExampleData_1.45.0.tar.gz | 
| StartedAt: 2025-10-28 12:22:50 -0400 (Tue, 28 Oct 2025) | 
| EndedAt: 2025-10-28 12:24:42 -0400 (Tue, 28 Oct 2025) | 
| EllapsedTime: 111.1 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: frmaExampleData.Rcheck | 
| Warnings: 2 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings frmaExampleData_1.45.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/frmaExampleData.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘frmaExampleData/DESCRIPTION’ ... OK
* this is package ‘frmaExampleData’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘frmaExampleData’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 22.8Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Failed with error:  'there is no package called 'affy''
  Error loading dataset 'AffyBatch133a':
   Error in .requirePackage(package) : 
    unable to load required package 'affy'
  
  Failed with error:  'there is no package called 'affy''
  Error loading dataset 'AffyBatch133atag':
   Error in .requirePackage(package) : 
    unable to load required package 'affy'
  
  Failed with error:  'there is no package called 'affy''
  Error loading dataset 'AffyBatch133plus2':
   Error in .requirePackage(package) : 
    unable to load required package 'affy'
  
  Failed with error:  'there is no package called 'affy''
  Error loading dataset 'AffyBatchExample':
   Error in .requirePackage(package) : 
    unable to load required package 'affy'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                        old_size new_size compress
  AffyBatch133a.rda       10.8Mb    6.8Mb       xz
  AffyBatch133atag.rda     2.2Mb    829Kb       xz
  AffyBatch133plus2.rda    5.4Mb    1.9Mb       xz
  AffyBatchExample.rda     4.3Mb    2.3Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/frmaExampleData.Rcheck/00check.log’
for details.
frmaExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL frmaExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘frmaExampleData’ ... ** this is package ‘frmaExampleData’ version ‘1.45.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frmaExampleData)
frmaExampleData.Rcheck/frmaExampleData-Ex.timings
| name | user | system | elapsed | |
| AffyBatch133a | 0.537 | 0.030 | 0.568 | |
| AffyBatch133atag | 0.208 | 0.005 | 0.212 | |
| AffyBatch133plus2 | 0.810 | 0.048 | 0.857 | |
| AffyBatchExample | 0.235 | 0.007 | 0.241 | |