This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).
BUILD results for estrogen on nebbiolo1
To the developers/maintainers of the estrogen package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data estrogen
###
##############################################################################
##############################################################################
* checking for file ‘estrogen/DESCRIPTION’ ... OK
* preparing ‘estrogen’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘estrogen.Rnw’ using knitr
Quitting from estrogen.Rnw:78-80 [a.show]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown Bioconductor version '3.23'; see https://bioconductor.org/install
---
Backtrace:
x
1. \-tools::buildVignettes(dir = ".", tangle = TRUE)
2. +-base::tryCatch(...)
3. | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
4. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | \-base (local) doTryCatch(return(expr), name, parentenv, handler)
6. \-engine$weave(file, quiet = quiet, encoding = enc)
7. \-(if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", ...
8. \-knitr:::process_file(text, output)
9. +-xfun:::handle_error(...)
10. +-base::withCallingHandlers(...)
11. \-knitr:::process_group(group)
12. \-knitr:::call_block(x)
13. \-knitr:::block_exec(params)
14. \-knitr:::eng_r(options)
15. +-knitr:::in_input_dir(...)
16. | \-knitr:::in_dir(input_dir(), expr)
17. \-knitr (local) evaluate(...)
18. \-evaluate::evaluate(...)
19. +-base::withRestarts(...)
20. | \-base (local) withRestartList(expr, restarts)
21. | +-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
22. | | \-base (local) doWithOneRestart(return(expr), restart)
23. | \-base (local) withRestartList(expr, restarts[-nr])
24. | \-base (local) withOneRestart(expr, restarts[[1L]])
25. | \-base (local) doWithOneRestart(return(expr), restart)
26. +-evaluate:::with_handlers(...)
27. | +-base::eval(call)
28. | | \-base::eval(call)
29. | \-base::withCallingHandlers(...)
30. \-watcher$print_value(ev$value, ev$visible, envir)
31. +-base::withVisible(handle_value(handler, value, visible, envir))
32. \-evaluate:::handle_value(handler, value, visible, envir)
33. \-handler$value(value, visible)
34. \-knitr (local) fun(x, options = options)
35. +-base::withVisible(knit_print(x, ...))
36. +-knitr::knit_print(x, ...)
37. \-knitr:::knit_print.default(x, ...)
38. \-knitr::normal_print(x)
39. +-methods::show(x)
40. \-methods::show(x)
41. +-base::cat(...)
42. +-Biobase::featureNames(object)
43. \-affy::featureNames(object)
44. \-affy::getCdfInfo(object)
45. \-affy::cdfFromBioC(cdfname, cur$where, verbose)
46. +-base::sapply(repositories(), contrib.url)
47. | \-base::lapply(X = X, FUN = FUN, ...)
48. \-BiocManager::repositories()
49. \-BiocManager:::.version_validate(version)
50. +-base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
51. \-BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'estrogen.Rnw' failed with diagnostics:
unknown Bioconductor version '3.23'; see https://bioconductor.org/install
--- failed re-building ‘estrogen.Rnw’
SUMMARY: processing the following file failed:
‘estrogen.Rnw’
Error: Vignette re-building failed.
Execution halted