| Back to Build/check report for BioC 3.22 experimental data | 
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This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 211/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| KEGGandMetacoreDzPathwaysGEO 1.29.0  (landing page) Gaurav Bhatti 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
| To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: KEGGandMetacoreDzPathwaysGEO | 
| Version: 1.29.0 | 
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz | 
| StartedAt: 2025-10-28 12:34:07 -0400 (Tue, 28 Oct 2025) | 
| EndedAt: 2025-10-28 12:35:08 -0400 (Tue, 28 Oct 2025) | 
| EllapsedTime: 60.3 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ... ** this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGandMetacoreDzPathwaysGEO)
KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings
| name | user | system | elapsed | |
| GSE1145 | 0.329 | 0.011 | 0.339 | |
| GSE11906 | 2.970 | 0.061 | 3.031 | |
| GSE14924_CD4 | 0.234 | 0.014 | 0.248 | |
| GSE14924_CD8 | 0.239 | 0.009 | 0.248 | |
| GSE16759 | 0.322 | 0.008 | 0.330 | |
| GSE19420 | 0.215 | 0.017 | 0.232 | |
| GSE20164 | 0.071 | 0.005 | 0.076 | |
| GSE22780 | 0.216 | 0.008 | 0.224 | |
| GSE23878 | 0.792 | 0.026 | 0.818 | |
| GSE24739_G0 | 0.457 | 0.006 | 0.463 | |
| GSE24739_G1 | 0.462 | 0.008 | 0.470 | |
| GSE30153 | 0.566 | 0.011 | 0.577 | |
| GSE32676 | 0.727 | 0.017 | 0.745 | |
| GSE38666_epithelia | 0.320 | 0.015 | 0.335 | |
| GSE38666_stroma | 0.210 | 0.007 | 0.218 | |
| GSE4183 | 0.240 | 0.013 | 0.254 | |
| GSE42057 | 0.985 | 0.014 | 0.999 | |
| GSE7305 | 0.695 | 0.015 | 0.710 | |
| KEGGandMetacoreDzPathwaysGEO-package | 0.634 | 0.017 | 0.651 | |