| Back to Build/check report for BioC 3.22 experimental data | 
 | 
This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 60/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ChIPXpressData 1.47.0  (landing page) George Wu 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| To the developers/maintainers of the ChIPXpressData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: ChIPXpressData | 
| Version: 1.47.0 | 
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ChIPXpressData_1.47.0.tar.gz | 
| StartedAt: 2025-10-28 12:06:16 -0400 (Tue, 28 Oct 2025) | 
| EndedAt: 2025-10-28 12:09:25 -0400 (Tue, 28 Oct 2025) | 
| EllapsedTime: 189.1 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: ChIPXpressData.Rcheck | 
| Warnings: 1 | 
##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ChIPXpressData_1.47.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.47.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 4306.8Mb
  sub-directories of 1Mb or more:
    extdata  4305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  GPL1261mean.rda    215Kb    180Kb       xz
  GPL1261var.rda     216Kb    189Kb       xz
  GPL570mean.rda     198Kb    159Kb       xz
  GPL570var.rda      209Kb    181Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.
ChIPXpressData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL ChIPXpressData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘ChIPXpressData’ ... ** this is package ‘ChIPXpressData’ version ‘1.47.0’ ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChIPXpressData)
ChIPXpressData.Rcheck/ChIPXpressData-Ex.timings
| name | user | system | elapsed | |
| DB_GPL1261.bigmemory | 0.047 | 0.017 | 0.066 | |
| DB_GPL570.bigmemory | 0.123 | 0.035 | 0.158 | |
| GPL1261mean | 0.024 | 0.002 | 0.025 | |
| GPL1261var | 0.011 | 0.000 | 0.011 | |
| GPL570mean | 0.011 | 0.000 | 0.012 | |
| GPL570var | 0.009 | 0.000 | 0.010 | |