| Back to Build/check report for BioC 3.22 experimental data | 
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This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 72/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| COPDSexualDimorphism.data 1.45.0  (landing page) J Fah Sathirapongsasuti 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| To the developers/maintainers of the COPDSexualDimorphism.data package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: COPDSexualDimorphism.data | 
| Version: 1.45.0 | 
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings COPDSexualDimorphism.data_1.45.0.tar.gz | 
| StartedAt: 2025-10-28 12:07:29 -0400 (Tue, 28 Oct 2025) | 
| EndedAt: 2025-10-28 12:08:41 -0400 (Tue, 28 Oct 2025) | 
| EllapsedTime: 72.0 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: COPDSexualDimorphism.data.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings COPDSexualDimorphism.data_1.45.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/COPDSexualDimorphism.data.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘COPDSexualDimorphism.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘COPDSexualDimorphism.data’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘COPDSexualDimorphism.data’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 34.4Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... NOTE
Invalid package aliases in Rd file 'COPDSexualDimorphism.data-package.Rd':
  ‘COPDSexualDimorphism-package’
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  lgrc.eqtl.rda     1.3Mb    653Kb       xz
  lgrc.expr.rda    11.0Mb    7.6Mb       xz
  lgrc.genes.rda    640Kb    367Kb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log’
for details.
COPDSexualDimorphism.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL COPDSexualDimorphism.data ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘COPDSexualDimorphism.data’ ... ** this is package ‘COPDSexualDimorphism.data’ version ‘1.45.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COPDSexualDimorphism.data)
COPDSexualDimorphism.data.Rcheck/COPDSexualDimorphism.data-Ex.timings
| name | user | system | elapsed | |
| COPDSexualDimorphism.data-package | 0.241 | 0.019 | 0.259 | |
| lgrc.expr | 0.503 | 0.031 | 0.534 | |