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This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 914
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Package 105/229HostnameOS / ArchINSTALLBUILDCHECK
ggcyto 1.37.0  (landing page)
Mike Jiang
Snapshot Date: 2025-07-24 06:00 -0400 (Thu, 24 Jul 2025)
git_url: https://git.bioconductor.org/packages/ggcyto
git_branch: devel
git_last_commit: 092e12e
git_last_commit_date: 2025-04-15 10:57:30 -0400 (Tue, 15 Apr 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped


BUILD results for ggcyto on teran2

To the developers/maintainers of the ggcyto package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ggcyto
Version: 1.37.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto
StartedAt: 2025-07-24 06:50:33 -0400 (Thu, 24 Jul 2025)
EndedAt: 2025-07-24 06:50:54 -0400 (Thu, 24 Jul 2025)
EllapsedTime: 21.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto
###
##############################################################################
##############################################################################


* checking for file ‘ggcyto/DESCRIPTION’ ... OK
* preparing ‘ggcyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Top_features_of_ggcyto.Rmd’ using rmarkdown

Quitting from Top_features_of_ggcyto.Rmd:58-60 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
    ▆
 1. ├─ggcyto::ggcyto(gs, aes(x = CD4, y = CD8))
 2. └─ggcyto:::ggcyto.GatingSet(gs, aes(x = CD4, y = CD8))
 3.   └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
 4.     ├─p + ggcyto_par_default()
 5.     └─p + ggcyto_par_default()
 6.       └─ggcyto:::add_ggcyto(e1, e2, e2name)
 7.         ├─e1 + e2.new
 8.         └─e1 + e2.new
 9.           └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Top_features_of_ggcyto.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘Top_features_of_ggcyto.Rmd’

--- re-building ‘autoplot.Rmd’ using rmarkdown

Quitting from autoplot.Rmd:27-29 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(fs, x = "FSC-H")
  2. └─ggcyto:::autoplot.flowSet(fs, x = "FSC-H")
  3.   ├─ggcyto::ggcyto(object, aes_q(x = as.symbol(x)), ...)
  4.   └─ggcyto:::ggcyto.flowSet(object, aes_q(x = as.symbol(x)), ...)
  5.     ├─p + ggcyto_par_default()
  6.     └─p + ggcyto_par_default()
  7.       └─ggcyto:::add_ggcyto(e1, e2, e2name)
  8.         ├─e1 + e2.new
  9.         └─e1 + e2.new
 10.           └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'autoplot.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘autoplot.Rmd’

--- re-building ‘ggcyto.GatingSet.Rmd’ using rmarkdown
--- finished re-building ‘ggcyto.GatingSet.Rmd’

--- re-building ‘ggcyto.flowSet.Rmd’ using rmarkdown

Quitting from ggcyto.flowSet.Rmd:29-33 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
    ▆
 1. ├─ggcyto::ggcyto(fs, aes(x = `FSC-H`))
 2. └─ggcyto:::ggcyto.flowSet(fs, aes(x = `FSC-H`))
 3.   ├─p + ggcyto_par_default()
 4.   └─p + ggcyto_par_default()
 5.     └─ggcyto:::add_ggcyto(e1, e2, e2name)
 6.       ├─e1 + e2.new
 7.       └─e1 + e2.new
 8.         └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggcyto.flowSet.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘ggcyto.flowSet.Rmd’

SUMMARY: processing the following files failed:
  ‘Top_features_of_ggcyto.Rmd’ ‘autoplot.Rmd’ ‘ggcyto.flowSet.Rmd’

Error: Vignette re-building failed.
Execution halted