Back to Rapid builds (Linux only) of a subset of BioC 3.22
Report updated every 6 hours

This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 914
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 90/229HostnameOS / ArchINSTALLBUILDCHECK
flowStats 4.21.0  (landing page)
Greg Finak , Mike Jiang
Snapshot Date: 2025-07-24 06:00 -0400 (Thu, 24 Jul 2025)
git_url: https://git.bioconductor.org/packages/flowStats
git_branch: devel
git_last_commit: 88c6e36
git_last_commit_date: 2025-04-15 09:44:42 -0400 (Tue, 15 Apr 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for flowStats on teran2

To the developers/maintainers of the flowStats package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowStats
Version: 4.21.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats
StartedAt: 2025-07-24 06:45:44 -0400 (Thu, 24 Jul 2025)
EndedAt: 2025-07-24 06:46:10 -0400 (Thu, 24 Jul 2025)
EllapsedTime: 25.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats
###
##############################################################################
##############################################################################


* checking for file ‘flowStats/DESCRIPTION’ ... OK
* preparing ‘flowStats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GettingStartedWithFlowStats.Rnw’ using Sweave
Warning: replacing previous import ‘flowViz::contour’ by ‘graphics::contour’ when loading ‘flowStats’
As part of improvements to flowWorkspace, some behavior of
GatingSet objects has changed. For details, please read the section
titled "The cytoframe and cytoset classes" in the package vignette:

  vignette("flowWorkspace-Introduction", "flowWorkspace")
Loading required package: ggplot2
Loading required package: ncdfFlow
Loading required package: BH
Loading required package: scales
done!

Error: processing vignette 'GettingStartedWithFlowStats.Rnw' failed with diagnostics:
 chunk 4 (label = lymphGatePlot) 
Error in add_ggcyto(e1, e2, e2name) : object '+.gg' not found

--- failed re-building ‘GettingStartedWithFlowStats.Rnw’

SUMMARY: processing the following file failed:
  ‘GettingStartedWithFlowStats.Rnw’

Error: Vignette re-building failed.
Execution halted