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This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 914
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Package 89/229HostnameOS / ArchINSTALLBUILDCHECK
flowCore 2.21.0  (landing page)
Mike Jiang
Snapshot Date: 2025-07-24 06:00 -0400 (Thu, 24 Jul 2025)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: devel
git_last_commit: 082a8af
git_last_commit_date: 2025-04-15 09:39:15 -0400 (Tue, 15 Apr 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for flowCore on teran2

To the developers/maintainers of the flowCore package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.21.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
StartedAt: 2025-07-24 06:45:29 -0400 (Thu, 24 Jul 2025)
EndedAt: 2025-07-24 06:46:04 -0400 (Thu, 24 Jul 2025)
EllapsedTime: 35.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
###
##############################################################################
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* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowTo-flowCore.Rnw’ using knitr

Quitting from HowTo-flowCore.Rnw:461-464 [Plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     x
  1. +-ggplot2::autoplot(x, "FL1-H", "FL2-H")
  2. \-ggcyto:::autoplot.flowFrame(x, "FL1-H", "FL2-H")
  3.   +-ggplot2::autoplot(object, x = x, ...)
  4.   \-ggcyto:::autoplot.flowSet(object, x = x, ...)
  5.     +-ggcyto::ggcyto(...)
  6.     \-ggcyto:::ggcyto.flowSet(...)
  7.       +-p + ggcyto_par_default()
  8.       \-p + ggcyto_par_default()
  9.         \-ggcyto:::add_ggcyto(e1, e2, e2name)
 10.           +-e1 + e2.new
 11.           \-e1 + e2.new
 12.             \-ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HowTo-flowCore.Rnw' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘HowTo-flowCore.Rnw’

SUMMARY: processing the following file failed:
  ‘HowTo-flowCore.Rnw’

Error: Vignette re-building failed.
Execution halted