##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
###
##############################################################################
##############################################################################


* checking for file ‘Rsubread/DESCRIPTION’ ... OK
* preparing ‘Rsubread’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Rsubread.Rnw’ using Sweave
trying URL 'https://shilab-bioinformatics.github.io/cellCounts-Example/cellCounts-Example.zip'
Content type 'application/x-zip-compressed' length 74690393 bytes (71.2 MB)
==================================================
downloaded 71.2 MB


 *** caught segfault ***
address (nil), cause 'memory not mapped'

Traceback:
 1: cellCounts(paste0(temp.dir, "/chr1"), sample.sheet, nthreads = 1,     input.mode = "FASTQ", annot.inbuilt = "hg38")
 2: eval(expr, .GlobalEnv)
 3: eval(expr, .GlobalEnv)
 4: withVisible(eval(expr, .GlobalEnv))
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7: tryCatchList(expr, classes, parentenv, handlers)
 8: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call, nlines = 1L)        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
 9: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
10: evalFunc(ce, options)
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(evalFunc(ce, options), finally = {    cat("\n")    sink()})
13: driver$runcode(drobj, chunk, chunkopts)
14: utils::Sweave(...)
15: engine$weave(file, quiet = quiet, encoding = enc)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
20: tools::buildVignettes(dir = ".", tangle = TRUE)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)