Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours - BUILD results for zellkonverter on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for zellkonverter on teran2

To the developers/maintainers of the zellkonverter package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: zellkonverter

Version: 1.21.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data zellkonverter

StartedAt: 2025-10-30 13:10:44 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 13:11:07 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 23.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data zellkonverter
###
##############################################################################
##############################################################################


* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* preparing ‘zellkonverter’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘zellkonverter.Rmd’ using rmarkdown
<sys>:0: FutureWarning: Use varm (e.g. `k in adata.varm` or `adata.varm.keys() | {'u'}`) instead of AnnData.varm_keys, AnnData.varm_keys is deprecated and will be removed in the future.
<sys>:0: FutureWarning: Use obsm (e.g. `k in adata.obsm` or `adata.obsm.keys() | {'u'}`) instead of AnnData.obsm_keys, AnnData.obsm_keys is deprecated and will be removed in the future.

Quitting from zellkonverter.Rmd:57-63 [write]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'zellkonverter.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
--- failed re-building ‘zellkonverter.Rmd’

SUMMARY: processing the following file failed:
  ‘zellkonverter.Rmd’

Error: Vignette re-building failed.
Execution halted