Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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BUILD results for maftools on teran2

To the developers/maintainers of the maftools package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: maftools

Version: 2.27.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools

StartedAt: 2025-10-30 12:47:30 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 12:48:08 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 38.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools
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* checking for file ‘maftools/DESCRIPTION’ ... OK
* preparing ‘maftools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cancer_hotspots.Rmd’ using rmarkdown
--- finished re-building ‘cancer_hotspots.Rmd’

--- re-building ‘cnv_analysis.Rmd’ using rmarkdown
--- finished re-building ‘cnv_analysis.Rmd’

--- re-building ‘maftools.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter

Quitting from maftools.Rmd:515-519 [trinucleotideMatrix]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'BSgenome' required by 'BSgenome.Hsapiens.UCSC.hg19' could not be found
---
Backtrace:
    ▆
 1. └─base::library("BSgenome.Hsapiens.UCSC.hg19", quietly = TRUE)
 2.   └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'maftools.Rmd' failed with diagnostics:
package 'BSgenome' required by 'BSgenome.Hsapiens.UCSC.hg19' could not be found
--- failed re-building ‘maftools.Rmd’

--- re-building ‘oncoplots.Rmd’ using rmarkdown
--- finished re-building ‘oncoplots.Rmd’

SUMMARY: processing the following file failed:
  ‘maftools.Rmd’

Error: Vignette re-building failed.
Execution halted