| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-12 01:01 -0500 (Fri, 12 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 133/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| limma 3.67.0 (landing page) Gordon Smyth
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the limma package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: limma |
| Version: 3.67.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma |
| StartedAt: 2025-12-12 00:33:28 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 00:33:30 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma
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* checking for file ‘limma/DESCRIPTION’ ... OK
* preparing ‘limma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘limma’ ...
** this is package ‘limma’ version ‘3.67.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c init.c -o init.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c normexp.c -o normexp.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c weighted_lowess.c -o weighted_lowess.o
gcc -std=gnu2x -shared -L/usr/local/lib -o limma.so init.o normexp.o weighted_lowess.o
installing to /tmp/RtmpPKpFRK/Rinst3f568bcfa6e1e/00LOCK-limma/00new/limma/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error in lazyLoadDBinsertValue(data, datafile, ascii, compress, envhook) :
write failed
Calls: <Anonymous> ... lazyLoadDBinsertValue -> <Anonymous> -> lazyLoadDBinsertValue
Execution halted
ERROR: lazy loading failed for package ‘limma’
* removing ‘/tmp/RtmpPKpFRK/Rinst3f568bcfa6e1e/limma’
-----------------------------------
ERROR: package installation failed