Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
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BUILD results for hpar on teran2

To the developers/maintainers of the hpar package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: hpar

Version: 1.53.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data hpar

StartedAt: 2025-12-12 00:32:46 -0500 (Fri, 12 Dec 2025)

EndedAt: 2025-12-12 00:33:10 -0500 (Fri, 12 Dec 2025)

EllapsedTime: 24.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data hpar
###
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* checking for file ‘hpar/DESCRIPTION’ ... OK
* preparing ‘hpar’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘hpar.Rmd’ using rmarkdown

Quitting from hpar.Rmd:320-329 [uc-db]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
     ▆
  1. ├─AnnotationDbi::select(...)
  2. └─AnnotationDbi::select(...)
  3.   └─AnnotationDbi:::.select(...)
  4.     └─AnnotationDbi:::.legacySelect(x, keys, cols, keytype, jointype)
  5.       └─AnnotationDbi:::.extractData(...)
  6.         └─AnnotationDbi:::dbQuery(dbconn(x), sql)
  7.           ├─DBI::dbGetQuery(conn, SQL)
  8.           └─DBI::dbGetQuery(conn, SQL)
  9.             └─DBI (local) .local(conn, statement, ...)
 10.               ├─DBI::dbSendQuery(conn, statement, ...)
 11.               └─RSQLite::dbSendQuery(conn, statement, ...)
 12.                 └─RSQLite (local) .local(conn, statement, ...)
 13.                   ├─methods::new(...)
 14.                   │ ├─methods::initialize(value, ...)
 15.                   │ └─methods::initialize(value, ...)
 16.                   └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hpar.Rmd' failed with diagnostics:
database or disk is full
--- failed re-building ‘hpar.Rmd’

SUMMARY: processing the following file failed:
  ‘hpar.Rmd’

Error: Vignette re-building failed.
Execution halted