Back to Rapid builds (Linux only) of a subset of BioC 3.23
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This page was generated on 2025-12-12 01:01 -0500 (Fri, 12 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 113/230HostnameOS / ArchINSTALLBUILDCHECK
graph 1.89.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-12-12 00:00 -0500 (Fri, 12 Dec 2025)
git_url: https://git.bioconductor.org/packages/graph
git_branch: devel
git_last_commit: 5493460
git_last_commit_date: 2025-12-02 12:07:34 -0500 (Tue, 02 Dec 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for graph on teran2

To the developers/maintainers of the graph package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: graph
Version: 1.89.1
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data graph
StartedAt: 2025-12-12 00:32:20 -0500 (Fri, 12 Dec 2025)
EndedAt: 2025-12-12 00:32:39 -0500 (Fri, 12 Dec 2025)
EllapsedTime: 18.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data graph
###
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* checking for file ‘graph/DESCRIPTION’ ... OK
* preparing ‘graph’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GraphClass.Rmd’ using rmarkdown
--- finished re-building ‘GraphClass.Rmd’

--- re-building ‘MultiGraphClass.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Error: processing vignette 'MultiGraphClass.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘MultiGraphClass.Rmd’

--- re-building ‘clusterGraph.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'clusterGraph.knit'
pandoc: /tmp/RtmpKQi7Vy/Rbuild3f49676e19e062/graph/vignettes/clusterGraph.html: hClose: resource exhausted (No space left on device)
Error: processing vignette 'clusterGraph.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘clusterGraph.Rmd’

--- re-building ‘graph.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Error: processing vignette 'graph.Rmd' failed with diagnostics:
E