Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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BUILD results for glmGamPoi on teran2

To the developers/maintainers of the glmGamPoi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: glmGamPoi

Version: 1.23.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data glmGamPoi

StartedAt: 2025-10-30 12:43:30 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 12:44:23 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 53.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data glmGamPoi
###
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* checking for file ‘glmGamPoi/DESCRIPTION’ ... OK
* preparing ‘glmGamPoi’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘glmGamPoi.Rmd’ using rmarkdown

Quitting from glmGamPoi.Rmd:82-91 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImportFrom(...)
 3.   │ └─base::asNamespace(ns)
 4.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 5.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.       └─base (local) withOneRestart(expr, restarts[[1L]])
 7.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'glmGamPoi.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘glmGamPoi.Rmd’

--- re-building ‘pseudobulk.Rmd’ using rmarkdown

Quitting from pseudobulk.Rmd:37-42 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImportFrom(...)
 3.   │ └─base::asNamespace(ns)
 4.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 5.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.       └─base (local) withOneRestart(expr, restarts[[1L]])
 7.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pseudobulk.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘pseudobulk.Rmd’

SUMMARY: processing the following files failed:
  ‘glmGamPoi.Rmd’ ‘pseudobulk.Rmd’

Error: Vignette re-building failed.
Execution halted