| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 97/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| gdsfmt 1.47.0 (landing page) Xiuwen Zheng
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
|
To the developers/maintainers of the gdsfmt package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gdsfmt |
| Version: 1.47.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL gdsfmt |
| StartedAt: 2025-12-11 12:05:40 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 12:06:39 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 58.9 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL gdsfmt
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’
* installing *source* package ‘gdsfmt’ ...
** this is package ‘gdsfmt’ version ‘1.47.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c R_CoreArray.cpp -o R_CoreArray.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c gdsfmt.cpp -o gdsfmt.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c digest.cpp -o digest.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
CoreArray/dBitGDS.cpp:390:1: fatal error: error writing to /tmp/ccaxpta6.s: No space left on device
390 | }
| ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.23-bioc-rapid/R/etc/Makeconf:209: CoreArray/dBitGDS.o] Error 1
ERROR: compilation failed for package ‘gdsfmt’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/gdsfmt’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/gdsfmt’