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This page was generated on 2026-03-27 22:11 -0400 (Fri, 27 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-12 r89611) -- "Unsuffered Consequences" 920
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Package 5/230HostnameOS / ArchINSTALLBUILDCHECK
alabaster.base 1.11.3  (landing page)
Aaron Lun
Snapshot Date: 2026-03-27 18:00 -0400 (Fri, 27 Mar 2026)
git_url: https://git.bioconductor.org/packages/alabaster.base
git_branch: devel
git_last_commit: eaf1475
git_last_commit_date: 2026-03-24 23:09:40 -0400 (Tue, 24 Mar 2026)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

INSTALL results for alabaster.base on teran2

To the developers/maintainers of the alabaster.base package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: alabaster.base
Version: 1.11.3
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL alabaster.base
StartedAt: 2026-03-27 18:14:26 -0400 (Fri, 27 Mar 2026)
EndedAt: 2026-03-27 18:14:30 -0400 (Fri, 27 Mar 2026)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL alabaster.base
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’
* installing *source* package ‘alabaster.base’ ...
** this is package ‘alabaster.base’ version ‘1.11.3’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -I../inst/include -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG -I../inst/include -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c check_csv.cpp -o check_csv.o
In file included from ../inst/include/comservatory/read.hpp:7,
                 from ../inst/include/comservatory/comservatory.hpp:16,
                 from check_csv.cpp:2:
../inst/include/comservatory/Parser.hpp:16:10: fatal error: byteme/PerByte.hpp: No such file or directory
   16 | #include "byteme/PerByte.hpp"
      |          ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.23-bioc-rapid/R/etc/Makeconf:197: check_csv.o] Error 1
ERROR: compilation failed for package ‘alabaster.base’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/alabaster.base’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/alabaster.base’