| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| affy 1.89.0 (landing page) Robert D. Shear
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||
|
To the developers/maintainers of the affy package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: affy |
| Version: 1.89.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:affy.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings affy_1.89.0.tar.gz |
| StartedAt: 2025-12-11 12:41:49 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 12:41:54 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 5.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: affy.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:affy.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings affy_1.89.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘affy/DESCRIPTION’ ... OK
* this is package ‘affy’ version ‘1.89.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Robert D. Shear <rshear@ds.dfci.harvard.edu>’
Unknown, possibly misspelled, fields in DESCRIPTION:
‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Rafael", "A."),
family = "Irizarry",
role = "aut",
email = "rafa@ds.dfci.harvard.edu"),
person(given = "Laurent",
family = "Gautier",
role = "aut",
email = "lgautier@gmail.com"),
person(given = c("Benjamin", "Milo"),
family = "Bolstad",
role = "aut",
email = "bmb@bmbolstad.com"),
person(given = c("Crispin", "Miller", "with", "contributions", "from", "Magnus", "Astrand"),
family = "<Magnus.Astrand@astrazeneca.com>",
role = "aut",
email = "Magnus.Astrand@astrazeneca.com"),
person(given = c("Leslie", "M."),
family = "Cope",
role = "aut",
email = "cope@mts.jhu.edu"),
person(given = "Robert",
family = "Gentleman",
role = "aut"),
person(given = "Jeff",
family = "Gentry",
role = "aut"),
person(given = "Conrad",
family = "Halling",
role = "aut",
email = "challing@agilixcorp.com"),
person(given = "Wolfgang",
family = "Huber",
role = "aut"),
person(given = "James",
family = "MacDonald",
role = "aut",
email = "jmacdon@u.washington.edu"),
person(given = c("Benjamin", "I.", "P."),
family = "Rubinstein",
role = "aut"),
person(given = "Christopher",
family = "Workman",
role = "aut",
email = "workman@cbs.dtu.dk"),
person(given = "John",
family = "Zhang",
role = "aut"),
person(given = c("Robert", "D."),
family = "Shear",
role = "cre",
email = "rshear@ds.dfci.harvard.edu"))
as necessary.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
The Description field should not start with the package name,
'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘affy’ can be installed ... ERROR
Installation failed.
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck/00check.log’
for details.
affy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL affy ### ############################################################################## ############################################################################## Fatal error: cannot create 'R_TempDir'