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This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 2/230HostnameOS / ArchINSTALLBUILDCHECK
affy 1.89.0  (landing page)
Robert D. Shear
Snapshot Date: 2025-12-11 12:00 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/affy
git_branch: devel
git_last_commit: b2e5a66
git_last_commit_date: 2025-10-29 09:42:08 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    OK    ERROR  


CHECK results for affy on teran2

To the developers/maintainers of the affy package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: affy
Version: 1.89.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:affy.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings affy_1.89.0.tar.gz
StartedAt: 2025-12-11 12:41:49 -0500 (Thu, 11 Dec 2025)
EndedAt: 2025-12-11 12:41:54 -0500 (Thu, 11 Dec 2025)
EllapsedTime: 5.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: affy.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:affy.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings affy_1.89.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘affy/DESCRIPTION’ ... OK
* this is package ‘affy’ version ‘1.89.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Robert D. Shear <rshear@ds.dfci.harvard.edu>’

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rafael", "A."),
                      family = "Irizarry",
                      role = "aut",
                      email = "rafa@ds.dfci.harvard.edu"),
               person(given = "Laurent",
                      family = "Gautier",
                      role = "aut",
                      email = "lgautier@gmail.com"),
               person(given = c("Benjamin", "Milo"),
                      family = "Bolstad",
                      role = "aut",
                      email = "bmb@bmbolstad.com"),
               person(given = c("Crispin", "Miller", "with", "contributions", "from", "Magnus", "Astrand"),
                      family = "<Magnus.Astrand@astrazeneca.com>",
                      role = "aut",
                      email = "Magnus.Astrand@astrazeneca.com"),
               person(given = c("Leslie", "M."),
                      family = "Cope",
                      role = "aut",
                      email = "cope@mts.jhu.edu"),
               person(given = "Robert",
                      family = "Gentleman",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Gentry",
                      role = "aut"),
               person(given = "Conrad",
                      family = "Halling",
                      role = "aut",
                      email = "challing@agilixcorp.com"),
               person(given = "Wolfgang",
                      family = "Huber",
                      role = "aut"),
               person(given = "James",
                      family = "MacDonald",
                      role = "aut",
                      email = "jmacdon@u.washington.edu"),
               person(given = c("Benjamin", "I.", "P."),
                      family = "Rubinstein",
                      role = "aut"),
               person(given = "Christopher",
                      family = "Workman",
                      role = "aut",
                      email = "workman@cbs.dtu.dk"),
               person(given = "John",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("Robert", "D."),
                      family = "Shear",
                      role = "cre",
                      email = "rshear@ds.dfci.harvard.edu"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘affy’ can be installed ... ERROR
Installation failed.
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/affy.Rcheck/00check.log’
for details.


Installation output

affy.Rcheck/00install.out

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL affy
###
##############################################################################
##############################################################################


Fatal error: cannot create 'R_TempDir'

Tests output


Example timings