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This page was generated on 2025-12-12 01:01 -0500 (Fri, 12 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 188/230HostnameOS / ArchINSTALLBUILDCHECK
Rsamtools 2.27.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-12-12 00:00 -0500 (Fri, 12 Dec 2025)
git_url: https://git.bioconductor.org/packages/Rsamtools
git_branch: devel
git_last_commit: a2c9284
git_last_commit_date: 2025-10-29 10:04:41 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Rsamtools on teran2

To the developers/maintainers of the Rsamtools package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rsamtools
Version: 2.27.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools
StartedAt: 2025-12-12 00:37:55 -0500 (Fri, 12 Dec 2025)
EndedAt: 2025-12-12 00:37:56 -0500 (Fri, 12 Dec 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools
###
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* checking for file ‘Rsamtools/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_sort.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bambuffer.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bamfile.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bcffile.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bedidx.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/encode.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/fafile.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/idxstats.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/io_sam.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pbuffer_wrapper.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileup.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileupbam.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/sam_opts.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/sam_utils.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/samtools_patch.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/scan_bam_data.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/tabixfile.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/tagfilter.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/utilities.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/zip_compression.o': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/Rsamtools.so': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/BamFileIterator.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/BamIterator.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/BamRangeIterator.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/Biostrings_stubs.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/COMPAT_bcf_hdr_read.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/COMPAT_bcf_hdr_read.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/GenomicPosition.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/IRanges_stubs.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/Makevars': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PileupBuffer.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PileupBuffer.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PileupBufferShim.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PosCache.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PosCacheColl.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/PosCacheColl.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/R_init_Rsamtools.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/ResultManager.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/ResultManager.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/S4Vectors_stubs.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/Template.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/XVector_stubs.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/as_bam.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/as_bam.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_data.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_data.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_mate_iter.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_mate_iter.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_plbuf.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bam_sort.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bambuffer.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bambuffer.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bamfile.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bamfile.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bcffile.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bcffile.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/bedidx.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/encode.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/encode.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/fafile.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/fafile.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/idxstats.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/idxstats.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/io_sam.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/io_sam.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pbuffer_wrapper.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pbuffer_wrapper.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileup.cpp': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileup.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileupbam.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/pileupbam.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/samtools_patch.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/samtools_patch.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/scan_bam_data.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/scan_bam_data.h': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/tabixfile.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/tagfilter.c': No space left on device
cp: error writing '/tmp/RtmpiJHerK/Rbuild3f73837703d46d/Rsamtools/src/tagfilter.h': No space left on device
 ERROR
copying to build directory failed