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This page was generated on 2026-03-29 16:09 -0400 (Sun, 29 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-12 r89611) -- "Unsuffered Consequences" 920
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Package 167/230HostnameOS / ArchINSTALLBUILDCHECK
PSMatch 1.15.1  (landing page)
Laurent Gatto
Snapshot Date: 2026-03-29 12:00 -0400 (Sun, 29 Mar 2026)
git_url: https://git.bioconductor.org/packages/PSMatch
git_branch: devel
git_last_commit: f5d3f69
git_last_commit_date: 2025-12-20 08:41:12 -0400 (Sat, 20 Dec 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for PSMatch on teran2

To the developers/maintainers of the PSMatch package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PSMatch
Version: 1.15.1
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data PSMatch
StartedAt: 2026-03-29 13:20:05 -0400 (Sun, 29 Mar 2026)
EndedAt: 2026-03-29 13:21:07 -0400 (Sun, 29 Mar 2026)
EllapsedTime: 62.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data PSMatch
###
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* checking for file ‘PSMatch/DESCRIPTION’ ... OK
* preparing ‘PSMatch’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘AdjacencyMatrix.Rmd’ using rmarkdown
--- finished re-building ‘AdjacencyMatrix.Rmd’

--- re-building ‘Fragments.Rmd’ using rmarkdown

Quitting from Fragments.Rmd:59-62 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `joinSpectraData()`:
! 'by.x' not found in spectra variables.
---
Backtrace:
    ▆
 1. └─Spectra::joinSpectraData(sp, id, by.x = "spectrumId", by.y = "spectrumID")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Fragments.Rmd' failed with diagnostics:
'by.x' not found in spectra variables.
--- failed re-building ‘Fragments.Rmd’

--- re-building ‘PSM.Rmd’ using rmarkdown
--- finished re-building ‘PSM.Rmd’

SUMMARY: processing the following file failed:
  ‘Fragments.Rmd’

Error: Vignette re-building failed.
Execution halted