Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
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BUILD results for MsBackendSql on teran2

To the developers/maintainers of the MsBackendSql package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MsBackendSql

Version: 1.11.2

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendSql

StartedAt: 2025-12-12 00:34:27 -0500 (Fri, 12 Dec 2025)

EndedAt: 2025-12-12 00:34:46 -0500 (Fri, 12 Dec 2025)

EllapsedTime: 19.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendSql
###
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* checking for file ‘MsBackendSql/DESCRIPTION’ ... OK
* preparing ‘MsBackendSql’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MsBackendSql.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device

Quitting from MsBackendSql.Rmd:66-77 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! no such savepoint: dbWriteTable_4152517_rpznnbecnf
---
Backtrace:
     ▆
  1. └─MsBackendSql::createMsBackendSqlDatabase(con, fls)
  2.   └─MsBackendSql:::.insert_data(...)
  3.     └─MsBackendSql:::.insert_backend_blob2(con, s, index = index$spectrum_id)
  4.       ├─DBI::dbWriteTable(...)
  5.       └─RSQLite::dbWriteTable(...)
  6.         └─RSQLite (local) .local(conn, name, value, ...)
  7.           ├─DBI::dbRollback(conn, name = savepoint_id)
  8.           └─RSQLite::dbRollback(conn, name = savepoint_id)
  9.             └─RSQLite (local) .local(conn, ...)
 10.               ├─DBI::dbExecute(conn, paste0("ROLLBACK TO ", name_quoted))
 11.               └─DBI::dbExecute(conn, paste0("ROLLBACK TO ", name_quoted))
 12.                 ├─DBI::dbSendStatement(conn, statement, ...)
 13.                 └─DBI::dbSendStatement(conn, statement, ...)
 14.                   ├─DBI::dbSendQuery(conn, statement, ...)
 15.                   └─RSQLite::dbSendQuery(conn, statement, ...)
 16.                     └─RSQLite (local) .local(conn, statement, ...)
 17.                       ├─methods::new(...)
 18.                       │ ├─methods::initialize(value, ...)
 19.                       │ └─methods::initialize(value, ...)
 20.                       └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MsBackendSql.Rmd' failed with diagnostics:
no such savepoint: dbWriteTable_4152517_rpznnbecnf
--- failed re-building ‘MsBackendSql.Rmd’

SUMMARY: processing the following file failed:
  ‘MsBackendSql.Rmd’

Error: Vignette re-building failed.
Execution halted