| Back to Rapid builds (Linux only) of a subset of BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 896 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 152/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| MSnbase 2.37.0 (landing page) Laurent Gatto
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||
|
To the developers/maintainers of the MSnbase package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MSnbase |
| Version: 2.37.0 |
| Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:MSnbase.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings MSnbase_2.37.0.tar.gz |
| StartedAt: 2025-10-30 13:48:52 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 13:48:55 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 3.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MSnbase.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:MSnbase.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings MSnbase_2.37.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/MSnbase.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* this is package ‘MSnbase’ version ‘2.37.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘AnnotationHub’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/MSnbase.Rcheck/00check.log’
for details.