Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for KEGGgraph on teran2

To the developers/maintainers of the KEGGgraph package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: KEGGgraph

Version: 1.71.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGgraph

StartedAt: 2025-12-11 12:39:26 -0500 (Thu, 11 Dec 2025)

EndedAt: 2025-12-11 12:39:27 -0500 (Thu, 11 Dec 2025)

EllapsedTime: 1.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGgraph
###
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* checking for file ‘KEGGgraph/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/colorectalcancerSPIA.RData': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa00020.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa00062.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04010.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04012.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04110.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04115.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04210.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04310.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04350.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04370.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa04630.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa05210.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/hsa05212.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/kgml-ed-toy.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/ko00051.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/inst/extdata/map00260.xml': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGEdge-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGEdgeSubType-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGEdgeSubtype.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGEdgeType.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGGraphics-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGGroup-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGNode-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGNodeType.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGPATHID2NAME.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGPathway-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGPathwayInfo-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGReaction-class.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGpathway2Graph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/KEGGpathway2reactionGraph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/expandKEGGNode.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/expandKEGGPathway.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getDisplayName-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getEntryID-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getKEGGID-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getKEGGgeneLink-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getKEGGnodeData.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getKGMLurl.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getName-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getNamedElement.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getPathwayInfo-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getReactions-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getRgraphvizEdgeNames.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getSubtype-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getTitle-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getType-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/getValue-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/graphDensity.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/isHomoList.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/kgmlFileName2PathwayName.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/mergeGraphs.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/mergeKEGGgraphs.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/neighborhood.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseEntry.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseGraphics.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseKGML.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseKGML2DataFrame.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseKGML2Graph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseKGMLexpandMaps.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parsePathwayInfo.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseReaction.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseRelation.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/parseSubType.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/plotKEGGgraph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/pvalue2asterisk.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/queryKEGGsubgraph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/randomSubGraph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/splitKEGGgroup.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/subGraphByNodeType.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/subKEGGgraph.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/subtypeDisplay-methods.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/top.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/translateKEGGID2GeneID.Rd': No space left on device
cp: error writing '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/man/translateKEGGgraph.Rd': No space left on device
cp: cannot create directory '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/tests': No space left on device
cp: cannot create directory '/tmp/RtmppIEzxx/Rbuild373a0b3fcfdcd7/KEGGgraph/vignettes': No space left on device
 ERROR
copying to build directory failed