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This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 896
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Package 121/229HostnameOS / ArchINSTALLBUILDCHECK
HubPub 1.19.0  (landing page)
Kayla Interdonato
Snapshot Date: 2025-10-30 12:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/HubPub
git_branch: devel
git_last_commit: 78b6e76
git_last_commit_date: 2025-10-29 11:09:35 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for HubPub on teran2

To the developers/maintainers of the HubPub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HubPub
Version: 1.19.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub
StartedAt: 2025-10-30 12:45:10 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 12:45:18 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 8.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub
###
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* checking for file ‘HubPub/DESCRIPTION’ ... OK
* preparing ‘HubPub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CreateAHubPackage.Rmd’ using rmarkdown
--- finished re-building ‘CreateAHubPackage.Rmd’

--- re-building ‘HubPub.Rmd’ using rmarkdown

Quitting from HubPub.Rmd:90-112 [resource]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHubData'
---
Backtrace:
    ▆
 1. ├─HubPub::add_resource(file.path(fl, "examplePkg"), metadata)
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HubPub.Rmd' failed with diagnostics:
there is no package called 'ExperimentHubData'
--- failed re-building ‘HubPub.Rmd’

SUMMARY: processing the following file failed:
  ‘HubPub.Rmd’

Error: Vignette re-building failed.
Execution halted