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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('HDF5Array_1.41.0.tar.gz','quit-with-status'=TRUE)"
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── Installing HDF5Array ────────────────────────────────────────────────────────
✔ Package installed successfully
── HDF5Array session metadata ──────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpDx8hKw/file1b297c4008947e/HDF5Array
→ BiocVersion: 3.24
→ Package: HDF5Array
→ PackageVersion: 1.41.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/HDF5Array.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpDx8hKw/file1b297c4008947e/HDF5Array
→ installDir: /tmp/RtmpDx8hKw/file1b297c32ff6efe
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on HDF5Array ──────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.4 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: KEGG
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (62%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of HDF5Array...
* Checking coding practice...
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/dump-management.R (line 459, column 5)
    • cat() in R/dump-management.R (line 462, column 5)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/dump-management.R (line 490, column 17)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid '<<-' if possible (found 2 times)
  • <<- in R/zzz.R (line 10, column 41)
  • <<- in R/zzz.R (line 21, column 47)
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 5 times)
  • suppressWarnings() in R/dump-management.R (line 134, column 14)
  • ...
  • suppressWarnings() in R/utils.R (line 75, column 16)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
  The longest 5 functions are:
    • .load_CSC_H5SparseMatrixSeed() (R/H5SparseMatrixSeed-class.R): 69 lines
    • .validate_HDF5ArraySeed() (R/HDF5ArraySeed-class.R): 53 lines
    • TENxRealizationSink() (R/writeTENxMatrix.R): 52 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • HDF5Array-internals.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 7% of man
pages use at least one of these tags.
  Found in files:
    • H5ADMatrix-class.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • H5ADMatrix-class.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 1 lines (0%) are > 80 characters long.
  First few lines:
    • R/dump-management.R#L489 fmt <- "[%s] #%d In file '%s': c ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 931 lines (14%) are
not.
  First few lines:
    • R/dump-management.R#L82 "path to a new or exis ...
    • ...
    • vignettes/HDF5Array_performance.Rmd#L641 to its slower disk. ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 14 NOTES
ℹ See the HDF5Array.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.