Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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BUILD results for GSVA on teran2

To the developers/maintainers of the GSVA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GSVA

Version: 2.5.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA

StartedAt: 2025-10-30 12:44:23 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 12:45:44 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 80.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA
###
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* checking for file ‘GSVA/DESCRIPTION’ ... OK
* preparing ‘GSVA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GSVA.Rmd’ using rmarkdown
--- finished re-building ‘GSVA.Rmd’

--- re-building ‘GSVA_scRNAseq.Rmd’ using rmarkdown

Quitting from GSVA_scRNAseq.Rmd:90-96 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::library(TENxPBMCData)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GSVA_scRNAseq.Rmd' failed with diagnostics:
package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
--- failed re-building ‘GSVA_scRNAseq.Rmd’

SUMMARY: processing the following file failed:
  ‘GSVA_scRNAseq.Rmd’

Error: Vignette re-building failed.
Execution halted