Back to Rapid builds (Linux only) of a subset of BioC 3.23
Report updated every 6 hours

This page was generated on 2025-10-31 09:43 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 917
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 78/230HostnameOS / ArchINSTALLBUILDCHECK
EDASeq 2.45.0  (landing page)
Davide Risso
Snapshot Date: 2025-10-31 06:00 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/EDASeq
git_branch: devel
git_last_commit: 1f147bc
git_last_commit_date: 2025-10-29 10:08:53 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for EDASeq on teran2

To the developers/maintainers of the EDASeq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EDASeq
Version: 2.45.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EDASeq
StartedAt: 2025-10-31 06:41:39 -0400 (Fri, 31 Oct 2025)
EndedAt: 2025-10-31 06:41:46 -0400 (Fri, 31 Oct 2025)
EllapsedTime: 7.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EDASeq
###
##############################################################################
##############################################################################


* checking for file ‘EDASeq/DESCRIPTION’ ... OK
* preparing ‘EDASeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘EDASeq’ ...
** this is package ‘EDASeq’ version ‘2.45.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘ShortRead’:
 object ‘pattern’ is not exported by 'namespace:Biostrings'
Execution halted
ERROR: lazy loading failed for package ‘EDASeq’
* removing ‘/tmp/Rtmp9ZJycR/Rinst1998645a66faeb/EDASeq’
      -----------------------------------
ERROR: package installation failed