Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours - BUILD results for DirichletMultinomial on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
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BUILD results for DirichletMultinomial on teran2

To the developers/maintainers of the DirichletMultinomial package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DirichletMultinomial

Version: 1.53.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial

StartedAt: 2025-12-12 00:28:08 -0500 (Fri, 12 Dec 2025)

EndedAt: 2025-12-12 00:28:17 -0500 (Fri, 12 Dec 2025)

EllapsedTime: 9.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial
###
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* checking for file ‘DirichletMultinomial/DESCRIPTION’ ... OK
* preparing ‘DirichletMultinomial’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DirichletMultinomial.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in dir.create(dirname(name), recursive = TRUE) :
  cannot create dir '/tmp/RtmpklzNlW/Rbuild3f146246f0c89e/DirichletMultinomial/vignettes/DirichletMultinomial_files', reason 'No space left on device'
Write Error
Warning in close.connection(con) :
  Problem closing connection:  No space left on device

Quitting from DirichletMultinomial.Rmd:68-74 [taxon-counts]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! could not open file '/tmp/RtmpklzNlW/Rbuild3f146246f0c89e/DirichletMultinomial/vignettes/DirichletMultinomial_files/figure-html/taxon-counts-1.png'
---
Backtrace:
     ▆
  1. └─tools::buildVignettes(dir = ".", tangle = TRUE)
  2.   ├─base::tryCatch(...)
  3.   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   └─engine$weave(file, quiet = quiet, encoding = enc)
  7.     └─knitr:::vweave_rmarkdown(...)
  8.       └─rmarkdown::render(...)
  9.         └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           └─knitr:::process_file(text, output)
 11.             ├─xfun:::handle_error(...)
 12.             ├─base::withCallingHandlers(...)
 13.             └─knitr:::process_group(group)
 14.               └─knitr:::call_block(x)
 15.                 └─knitr:::block_exec(params)
 16.                   └─knitr:::eng_r(options)
 17.                     ├─base::unlist(sew(res, options))
 18.                     ├─knitr::sew(res, options)
 19.                     └─knitr:::sew.list(res, options)
 20.                       └─base::lapply(x, sew, options, ...)
 21.                         ├─knitr (local) FUN(X[[i]], ...)
 22.                         └─knitr:::sew.recordedplot(X[[i]], ...)
 23.                           └─base::mapply(...)
 24.                             └─knitr (local) `<fn>`(...)
 25.                               ├─knitr:::in_base_dir(...)
 26.                               │ └─knitr:::in_dir(d, expr)
 27.                               └─knitr:::plot2dev(...)
 28.                                 ├─base::print(plot)
 29.                                 └─grDevices:::print.recordedplot(plot)
 30.                                   └─grDevices::replayPlot(x)
 31.                                     └─base::tryCatch(.External2(C_playSnapshot, x), error = restore)
 32.                                       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 33.                                         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 34.                                           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DirichletMultinomial.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpklzNlW/Rbuild3f146246f0c89e/DirichletMultinomial/vignettes/DirichletMultinomial_files/figure-html/taxon-counts-1.png'
--- failed re-building ‘DirichletMultinomial.Rmd’

SUMMARY: processing the following file failed:
  ‘DirichletMultinomial.Rmd’

Error: Vignette re-building failed.
Execution halted