| Back to Rapid builds (Linux only) of a subset of BioC 3.24 Report updated every 4 hours |
This page was generated on 2026-05-08 14:45 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 (2026-04-24) -- "Because it was There" | 916 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 65/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | |||||||
| DelayedMatrixStats 1.35.0 (landing page) Peter Hickey
| teran2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERRORS | |||||||
|
To the developers/maintainers of the DelayedMatrixStats package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DelayedMatrixStats |
| Version: 1.35.0 |
| Command: /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedMatrixStats_1.35.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-08 14:31:54 -0400 (Fri, 08 May 2026) |
| EndedAt: 2026-05-08 14:32:28 -0400 (Fri, 08 May 2026) |
| EllapsedTime: 34.2 seconds |
| RetCode: 1 |
| Status: ERRORS |
| CheckDir: None |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedMatrixStats_1.35.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing DelayedMatrixStats ───────────────────────────────────────────────
✔ Package installed successfully
── DelayedMatrixStats session metadata ─────────────────────────────────────────
→ sourceDir: /tmp/RtmpgVcrDk/file1abd7842515de1/DelayedMatrixStats
→ BiocVersion: 3.24
→ Package: DelayedMatrixStats
→ PackageVersion: 1.35.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/DelayedMatrixStats.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpgVcrDk/file1abd7842515de1/DelayedMatrixStats
→ installDir: /tmp/RtmpgVcrDk/file1abd78c45a4d7
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on DelayedMatrixStats ─────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (75%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
Found in files:
• DelayedMatrixStatsOverview.Rmd
* Checking package installation calls in R code...
* Checking for library/require of DelayedMatrixStats...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
The longest 5 functions are:
• get_Nindex_as_IRangesList() (R/utils.R): 63 lines
• .DelayedArray_execute_delayed_ops() (R/utils.R): 52 lines
* Checking man page documentation...
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
The following pages do not:
• reexports.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 130 lines (2%) are > 80 characters long.
First few lines:
• R/colAlls.R#L57 force ...
• ...
• vignettes/DelayedMatrixStatsOverview.Rmd#L322 performance of these
methods, specifical ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 1776 lines (33%) are
not.
First few lines:
• R/AllGenerics.R#L43 function(x, Nindex) standardG ...
• ...
• vignettes/DelayedMatrixStatsOverview.Rmd#L282 times = 10) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 6 NOTES
ℹ See the DelayedMatrixStats.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.