| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 69/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| DEXSeq 1.57.0 (landing page) Alejandro Reyes
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||
|
To the developers/maintainers of the DEXSeq package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DEXSeq |
| Version: 1.57.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:DEXSeq.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings DEXSeq_1.57.0.tar.gz |
| StartedAt: 2025-12-11 12:51:18 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 12:51:22 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: DEXSeq.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:DEXSeq.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings DEXSeq_1.57.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/DEXSeq.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘DEXSeq/DESCRIPTION’ ... OK
* this is package ‘DEXSeq’ version ‘1.57.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Alejandro Reyes <alejandro.reyes.ds@gmail.com>’
Unknown, possibly misspelled, fields in DESCRIPTION:
‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Simon",
family = "Anders",
role = "aut",
email = "sanders@fs.tum.de"),
person(given = "Alejandro",
family = "Reyes",
role = c("aut", "cre"),
email = "alejandro.reyes.ds@gmail.com"))
as necessary.
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
The Title field should be in title case. Current version is:
‘Inference of differential exon usage in RNA-Seq’
In title case that is:
‘Inference of Differential Exon Usage in RNA-Seq’
The Description field should not start with the package name,
'This package' or similar.
Found the following URLs which should use \doi (with the DOI name only):
File ‘estimateSizeFactors.Rd’:
http://dx.doi.org/10.1186/gb-2010-11-10-r106
* checking package namespace information ... OK
* checking package dependencies ...Error in readRDS(tfo) : error reading from connection
Execution halted