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This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 896
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Package 67/229HostnameOS / ArchINSTALLBUILDCHECK
DESeq2 1.51.0  (landing page)
Michael Love
Snapshot Date: 2025-10-30 12:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/DESeq2
git_branch: devel
git_last_commit: 3323082
git_last_commit_date: 2025-10-29 10:13:48 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for DESeq2 on teran2

To the developers/maintainers of the DESeq2 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DESeq2
Version: 1.51.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
StartedAt: 2025-10-30 12:32:39 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 12:33:28 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 49.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
###
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* checking for file ‘DESeq2/DESCRIPTION’ ... OK
* preparing ‘DESeq2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DESeq2.Rmd’ using rmarkdown

Quitting from DESeq2.Rmd:378-382 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tximeta'
---
Backtrace:
    ▆
 1. └─base::library("tximeta")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DESeq2.Rmd' failed with diagnostics:
there is no package called 'tximeta'
--- failed re-building ‘DESeq2.Rmd’

SUMMARY: processing the following file failed:
  ‘DESeq2.Rmd’

Error: Vignette re-building failed.
Execution halted