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This page was generated on 2025-11-21 10:18 -0500 (Fri, 21 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 917
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Package 68/230HostnameOS / ArchINSTALLBUILDCHECK
DESeq2 1.51.5  (landing page)
Michael Love
Snapshot Date: 2025-11-21 06:00 -0500 (Fri, 21 Nov 2025)
git_url: https://git.bioconductor.org/packages/DESeq2
git_branch: devel
git_last_commit: 2ba09a9
git_last_commit_date: 2025-11-18 08:52:29 -0500 (Tue, 18 Nov 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for DESeq2 on teran2

To the developers/maintainers of the DESeq2 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DESeq2
Version: 1.51.5
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
StartedAt: 2025-11-21 06:42:54 -0500 (Fri, 21 Nov 2025)
EndedAt: 2025-11-21 06:43:28 -0500 (Fri, 21 Nov 2025)
EllapsedTime: 34.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
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* checking for file ‘DESeq2/DESCRIPTION’ ... OK
* preparing ‘DESeq2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘DESeq2’ ...
** this is package ‘DESeq2’ version ‘1.51.5’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c DESeq2.cpp -o DESeq2.o
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o DESeq2.so DESeq2.o RcppExports.o -llapack -L/home/rapidbuild/bbs-3.23-bioc-rapid/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /tmp/Rtmpcmw4my/Rinst25546c9e1c0d7/00LOCK-DESeq2/00new/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘DESeq2’ in namespaceExport(ns, exports):
 undefined exports: integrateWithSingleCell
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/Rtmpcmw4my/Rinst25546c9e1c0d7/DESeq2’
      -----------------------------------
ERROR: package installation failed