| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 35/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| BiocPkgTools 1.29.2 (landing page) Sean Davis
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the BiocPkgTools package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocPkgTools |
| Version: 1.29.2 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools |
| StartedAt: 2025-12-11 12:27:18 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 12:27:41 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 23.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools ### ############################################################################## ############################################################################## * checking for file ‘BiocPkgTools/DESCRIPTION’ ... OK * preparing ‘BiocPkgTools’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘BiocPkgTools.Rmd’ using rmarkdown /usr/bin/tar: report/alabaster.string/raw-results/nebbiolo1/install-out.txt: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/raw-results/nebbiolo1/buildsrc-out.txt: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/raw-results/nebbiolo1/checksrc-summary.dcf: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/raw-results/nebbiolo1/buildsrc-summary.dcf: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/kjohnson3-checksrc.html: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/index.html: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/kjohnson3-buildbin.html: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/nebbiolo1-checksrc.html: Cannot write: No space left on device /usr/bin/tar: report/alabaster.string/kjohnson3-buildsrc.html: Cannot write: No space left on device /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz/nebbiolo1-buildsrc.html: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz/nebbiolo1-install.html: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz/kjohnson3-install.html: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/install-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/buildbin-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/buildbin-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/checksrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/install-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/buildsrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/checksrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/kjohnson3/buildsrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/info.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results/nebbiolo1/install-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/scTreeViz/raw-results: Cannot mkdir: No such : No such file or directory /usr/bin/tar: report/scTreeViz: Cannot mkdir: No space left on device /usr/bin/tar: report/scTreeViz/kjohnson3-buildsrc.html: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/nebbiolo1-install.html: Cannot write: No space left on device /usr/bin/tar: report/MetaboDynamics/kjohnson3-install.html: Cannot write: No space left on device /usr/bin/tar: report/MetaboDynamics/raw-results: Cannot mkdir: No space left on device /usr/bin/tar: report/MetaboDynamics/raw-results: Cannot mkdir: No space left on device /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/install-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/buildbin-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/buildbin-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/checksrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/install-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/buildsrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/checksrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/kjohnson3/buildsrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results: Cannot mkdir: No space left on device /usr/bin/tar: report/MetaboDynamics/raw-results/info.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results: Cannot mkdir: No space left on device /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/install-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/checksrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/install-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/buildsrc-out.txt: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/checksrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1: Cannot mkdir: No such file or directory /usr/bin/tar: report/MetaboDynamics/raw-results/nebbiolo1/buildsrc-summary.dcf: Cannot open: No such file or directory /usr/bin/tar: report/MetaboDynamics/kjohnsonError: processing vignette 'BiocPkgTools.Rmd' failed with diagnostics: failed to create directory '/tmp/RtmpyrOQwU/file36cb393d3acaf1' --- failed re-building ‘BiocPkgTools.Rmd’ SUMMARY: processing the following file failed: ‘BiocPkgTools.Rmd’ Error: Vignette re-building failed. Execution halted