Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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BUILD results for BiocParallel on teran2

To the developers/maintainers of the BiocParallel package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocParallel

Version: 1.45.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel

StartedAt: 2025-10-30 12:28:05 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 12:28:52 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 47.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
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* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocParallel_BatchtoolsParam.Rmd’ using rmarkdown
--- finished re-building ‘BiocParallel_BatchtoolsParam.Rmd’

--- re-building ‘Errors_Logs_And_Debugging.Rmd’ using rmarkdown
--- finished re-building ‘Errors_Logs_And_Debugging.Rmd’

--- re-building ‘Introduction_To_BiocParallel.Rmd’ using rmarkdown

Quitting from Introduction_To_BiocParallel.Rmd:385-388 [forking_gr]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GenomicAlignments'
---
Backtrace:
    ▆
 1. └─base::library(GenomicAlignments)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction_To_BiocParallel.Rmd' failed with diagnostics:
there is no package called 'GenomicAlignments'
--- failed re-building ‘Introduction_To_BiocParallel.Rmd’

--- re-building ‘Random_Numbers.Rmd’ using rmarkdown
--- finished re-building ‘Random_Numbers.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_To_BiocParallel.Rmd’

Error: Vignette re-building failed.
Execution halted