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This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 46/230HostnameOS / ArchINSTALLBUILDCHECK
BSgenome 1.79.1  (landing page)
Hervé Pagès
Snapshot Date: 2025-12-11 12:00 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: devel
git_last_commit: c2fc0db
git_last_commit_date: 2025-11-03 17:15:06 -0500 (Mon, 03 Nov 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BSgenome on teran2

To the developers/maintainers of the BSgenome package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BSgenome
Version: 1.79.1
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2025-12-11 12:27:42 -0500 (Thu, 11 Dec 2025)
EndedAt: 2025-12-11 12:27:43 -0500 (Thu, 11 Dec 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘BSgenome’ ...
** this is package ‘BSgenome’ version ‘1.79.1’
** using staged installation
** R
** inst
Warning in file.append(to[okay], from[okay]) :
  write error during file append
** byte-compile and prepare package for lazy loading
Fatal error: cannot create 'R_TempDir'
ERROR: lazy loading failed for package ‘BSgenome’
* removing ‘/tmp/RtmpNmN8KL/Rinst36cdae24f2ef80/BSgenome’
      -----------------------------------
ERROR: package installation failed