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This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 15/230HostnameOS / ArchINSTALLBUILDCHECK
AnnotationHub 4.1.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-12-11 12:00 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/AnnotationHub
git_branch: devel
git_last_commit: 027c4b7
git_last_commit_date: 2025-10-29 10:14:23 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for AnnotationHub on teran2

To the developers/maintainers of the AnnotationHub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnnotationHub
Version: 4.1.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
StartedAt: 2025-12-11 12:25:29 -0500 (Thu, 11 Dec 2025)
EndedAt: 2025-12-11 12:26:50 -0500 (Thu, 11 Dec 2025)
EllapsedTime: 80.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
###
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* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘AnnotationHub-HOWTO.Rmd’ using rmarkdown
Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘AnnotationHub-HOWTO.Rmd’

--- re-building ‘AnnotationHub.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘AnnotationHub.Rmd’

--- re-building ‘TroubleshootingTheHubs.Rmd’ using rmarkdown
--- finished re-building ‘TroubleshootingTheHubs.Rmd’

SUMMARY: processing the following file failed:
  ‘AnnotationHub-HOWTO.Rmd’

Error: Vignette re-building failed.
Execution halted