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This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 896
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Package 14/229HostnameOS / ArchINSTALLBUILDCHECK
AnnotationForge 1.53.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-10-30 12:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/AnnotationForge
git_branch: devel
git_last_commit: a113c77
git_last_commit_date: 2025-10-29 10:11:26 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for AnnotationForge on teran2

To the developers/maintainers of the AnnotationForge package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnnotationForge
Version: 1.53.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2025-10-30 12:25:29 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 12:27:22 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 113.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘makeProbePackage.Rmd’ using rmarkdown

See
  ‘/tmp/RtmpqkNyiB/hgu95av2probe.Rcheck/00check.log’
for details.

Warning in .Internal(lapply(X, FUN)) :
  closing unused connection 4 (/tmp/RtmpWMi4cW/Rinst1ec14b16326b92/AnnotationForge/extdata/HG-U95Av2_probe_tab.gz)
--- finished re-building ‘makeProbePackage.Rmd’

--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr

Quitting from MakingNewAnnotationPackages.Rnw:53-57 [Homo.sapiens]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'OrganismDbi' required by 'Homo.sapiens' could not be found
---
Backtrace:
    x
 1. \-base::library(Homo.sapiens)
 2.   \-base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
package 'OrganismDbi' required by 'Homo.sapiens' could not be found
--- failed re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘SQLForge.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted