Back to Long Tests report for BioC 3.22

This page was generated on 2025-08-09 23:55 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-08-09 09:55 -0400 (Sat, 09 Aug 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-08-09 16:01:22 -0400 (Sat, 09 Aug 2025)
EndedAt: 2025-08-09 16:02:54 -0400 (Sat, 09 Aug 2025)
EllapsedTime: 92.6 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-09 16:01:55.567][biodb::testContext]
biodb.INFO [2025-08-09 16:01:55.570][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-09 16:01:55.571][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-08-09 16:01:55.572][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-09 16:01:55.572][biodb::testContext]
biodb.INFO [2025-08-09 16:01:55.577][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-09 16:01:55.579][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-09 16:01:55.585][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:01:55.586][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-09 16:01:55.587][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.590][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-09 16:01:55.603][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.606][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-09 16:01:55.607][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.610][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-09 16:01:55.611][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-09 16:01:55.612][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-09 16:01:55.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.615][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-09 16:01:55.616][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-09 16:01:55.617][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.620][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-09 16:01:55.620][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-09 16:01:55.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.623][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-09 16:01:55.624][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-09 16:01:55.625][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-09 16:01:55.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.628][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-09 16:01:55.628][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.631][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-09 16:01:55.632][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-09 16:01:55.633][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-09 16:01:55.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.636][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-09 16:01:55.636][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-09 16:01:55.637][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-09 16:01:55.638][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-09 16:01:55.639][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-09 16:01:55.640][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-09 16:01:55.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.642][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-09 16:01:55.643][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-09 16:01:55.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.646][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-09 16:01:55.647][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-09 16:01:55.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.650][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-09 16:01:55.651][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-09 16:01:55.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.654][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-09 16:01:55.654][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-09 16:01:55.655][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-09 16:01:55.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.658][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-09 16:01:55.659][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-09 16:01:55.677][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-09 16:01:55.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.681][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-09 16:01:55.681][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-09 16:01:55.682][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-09 16:01:55.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.688][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-09 16:01:55.718][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.731][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-09 16:01:55.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:01:55.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.738][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-09 16:01:55.738][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:01:55.739][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.740][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-09 16:01:55.741][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:01:55.742][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-09 16:01:55.743][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-09 16:01:55.744][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:01:55.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:01:55.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.750][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:01:55.751][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:01:55.752][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.753][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.754][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-09 16:01:55.756][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.757][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-09 16:01:55.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.758][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:01:55.759][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.760][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.761][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.762][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.762][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-09 16:01:55.763][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:01:55.764][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.765][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-09 16:01:55.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:01:55.767][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.768][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:01:55.768][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:01:55.768][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:01:55.768][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-09 16:01:55.768][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-09 16:01:55.769][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:01:55.770][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.771][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:01:55.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.773][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.774][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.775][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:01:55.776][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:01:55.777][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.778][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.779][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-09 16:01:55.780][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.781][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-09 16:01:55.782][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.782][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:01:55.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.785][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.785][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.786][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-09 16:01:55.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:01:55.788][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.788][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-09 16:01:55.789][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:01:55.790][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.790][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.791][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.792][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:01:55.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.793][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.794][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:01:55.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.797][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.798][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:01:55.798][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:01:55.799][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.800][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.801][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-09 16:01:55.802][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.803][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-09 16:01:55.804][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.804][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:01:55.805][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.806][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.807][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.807][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.808][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-09 16:01:55.809][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:01:55.810][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.811][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-09 16:01:55.812][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:01:55.812][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.813][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:55.814][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.815][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-09 16:01:55.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.817][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:01:55.818][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:55.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:55.820][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:01:55.821][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.821][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:01:55.822][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:01:55.823][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:55.824][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-09 16:01:55.827][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:01:55.828][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:55.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:55.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:55.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:55.894][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-09 16:01:55.898][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-09 16:01:55.899][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-09 16:01:55.900][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-09 16:01:55.901][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-09 16:01:55.902][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-09 16:01:55.903][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-09 16:01:55.904][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-09 16:01:55.905][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-09 16:01:55.906][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-09 16:01:55.908][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-09 16:01:55.909][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-09 16:01:55.910][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-09 16:01:55.911][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-09 16:01:55.912][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-09 16:01:55.913][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-09 16:01:55.914][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-09 16:01:55.916][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-09 16:01:55.917][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-09 16:01:55.918][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-09 16:01:55.919][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-09 16:01:55.920][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-09 16:01:55.921][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-09 16:01:55.922][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-09 16:01:55.923][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-09 16:01:55.925][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-09 16:01:55.926][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-09 16:01:55.927][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-09 16:01:55.928][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-09 16:01:55.929][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-09 16:01:55.930][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-09 16:01:55.931][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-09 16:01:55.932][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-09 16:01:55.934][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-09 16:01:55.935][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-09 16:01:55.936][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-09 16:01:55.937][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-09 16:01:55.938][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-09 16:01:55.939][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-09 16:01:55.940][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-09 16:01:55.941][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-09 16:01:55.942][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-09 16:01:55.944][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-09 16:01:55.945][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-09 16:01:55.946][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-09 16:01:55.947][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-09 16:01:55.948][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-09 16:01:55.949][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-09 16:01:55.950][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-09 16:01:55.951][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-09 16:01:55.953][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-09 16:01:55.954][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-09 16:01:55.955][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-09 16:01:55.956][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-09 16:01:55.957][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-09 16:01:55.958][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-09 16:01:55.959][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-09 16:01:55.960][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-09 16:01:55.962][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-09 16:01:55.963][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-09 16:01:55.964][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-09 16:01:55.965][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-09 16:01:55.966][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-09 16:01:55.967][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-09 16:01:55.969][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-09 16:01:55.970][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-09 16:01:55.971][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-09 16:01:55.972][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-09 16:01:55.973][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-09 16:01:55.974][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-09 16:01:55.975][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-09 16:01:55.977][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-09 16:01:55.978][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-09 16:01:55.979][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-09 16:01:55.980][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-09 16:01:55.981][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-09 16:01:55.982][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-09 16:01:55.983][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-09 16:01:55.984][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-09 16:01:55.986][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-09 16:01:55.987][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-09 16:01:55.988][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-09 16:01:55.989][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-09 16:01:55.994][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-09 16:01:55.995][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-09 16:01:55.998][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-09 16:01:55.998][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:55.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.000][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-09 16:01:56.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:01:56.091][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-09 16:01:56.099][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-09 16:01:56.100][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:56.101][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-09 16:01:56.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:56.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-09 16:01:56.103][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:56.104][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-09 16:01:56.105][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:56.106][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-09 16:01:56.106][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-09 16:01:56.107][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-09 16:01:56.108][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:56.109][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-09 16:01:56.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-09 16:01:56.110][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-09 16:01:56.111][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-09 16:01:56.112][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-09 16:01:56.112][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-09 16:01:56.112][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-09 16:01:56.113][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-09 16:01:56.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:56.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:56.115][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-09 16:01:56.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-09 16:01:56.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-09 16:01:56.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-09 16:01:56.118][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-09 16:01:56.118][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-09 16:01:56.119][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-09 16:01:56.119][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-09 16:01:56.120][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-09 16:01:56.121][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-09 16:01:56.121][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-09 16:01:56.125][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-09 16:01:56.127][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-09 16:01:56.128][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-09 16:01:56.129][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-09 16:01:56.130][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-09 16:01:56.131][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-09 16:01:56.150][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-09 16:01:56.208][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-09 16:01:56.216][biodb::testThat]
biodb.INFO [2025-08-09 16:01:56.217][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-09 16:01:56.217][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:56.218][biodb::testThat]
biodb.TRACE[2025-08-09 16:01:56.222][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-09 16:01:56.223][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:01:56.226][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:01:56.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:56.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:56.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.275][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.326][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:56.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.355][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:56.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:56.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:56.429][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-09 16:01:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.752][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.858][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:56.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:56.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:56.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:56.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:56.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:56.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:56.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:56.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:56.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:56.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:56.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:56.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:56.933][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:56.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.949][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-08-09 16:01:56.975][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:01:56.977][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:01:56.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:56.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:56.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:56.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:56.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:56.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:56.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:56.988][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:56.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.011][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.012][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.018][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.043][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.056][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:57.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:57.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:57.111][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-08-09 16:01:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:57.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.283][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.306][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.320][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.330][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.405][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.428][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.584][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.604][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.619][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-08-09 16:01:57.620][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:01:57.621][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:01:57.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:57.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:57.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:57.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:57.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:57.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:57.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:57.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.644][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.678][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.698][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:57.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:57.744][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-08-09 16:01:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.843][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:57.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:57.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.941][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:57.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.016][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.038][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.061][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.098][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.105][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.106][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.112][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.156][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.157][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.172][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:01:58.179][biodb::testThat]
biodb.INFO [2025-08-09 16:01:58.180][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-09 16:01:58.181][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:58.182][biodb::testThat]
biodb.DEBUG[2025-08-09 16:01:58.184][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-08-09 16:01:58.275][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-08-09 16:01:58.279][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:01:58.283][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-08-09 16:01:58.286][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-08-09 16:01:58.290][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-08-09 16:01:58.291][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:01:58.292][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-09 16:01:58.293][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-09 16:01:58.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:58.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:58.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:58.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:58.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:58.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:58.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:58.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.344][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.348][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:58.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:58.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:58.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:58.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:58.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:58.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:58.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:58.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.457][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:58.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:01:58.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:01:58.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:01:58.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:01:58.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:01:58.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:01:58.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:01:58.527][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.534][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:01:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:01:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:01:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:01:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:01:58.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.569][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:01:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.589][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:01:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:01:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:01:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:01:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:01:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:01:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:01:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:58.658][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-08-09 16:01:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-09 16:01:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-09 16:01:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-09 16:01:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:01:58.703][biodb::testThat]
biodb.INFO [2025-08-09 16:01:58.704][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-09 16:01:58.704][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:58.705][biodb::testThat]
biodb.TRACE[2025-08-09 16:01:58.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.710][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:58.711][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-09 16:01:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:01:58.750][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-08-09 16:01:58.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-09 16:01:58.771][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:01:58.775][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-09 16:01:58.776][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:01:58.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:01:58.814][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:01:58.817][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:01:58.818][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:01:58.820][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-09 16:01:58.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:01:58.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.838][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:01:58.842][biodb::testThat]
biodb.INFO [2025-08-09 16:01:58.843][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-09 16:01:58.843][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:58.844][biodb::testThat]
biodb.TRACE[2025-08-09 16:01:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:01:58.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:01:58.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:01:58.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:01:58.924][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:01:58.927][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:01:58.927][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-08-09 16:01:58.943][biodb::testThat]
biodb.INFO [2025-08-09 16:01:58.944][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-09 16:01:58.944][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:58.945][biodb::testThat]
biodb.TRACE[2025-08-09 16:01:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:58.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:58.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:58.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:58.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:01:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:01:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:01:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:01:59.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:01:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-09 16:01:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-09 16:01:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-09 16:01:59.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:01:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-09 16:01:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:01:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:01:59.035][biodb::testThat]
biodb.INFO [2025-08-09 16:01:59.036][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-09 16:01:59.036][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:59.037][biodb::testThat]
biodb.INFO [2025-08-09 16:01:59.045][biodb::testThat]
biodb.INFO [2025-08-09 16:01:59.046][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-09 16:01:59.047][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:59.047][biodb::testThat]
biodb.INFO [2025-08-09 16:01:59.054][biodb::testThat]
biodb.INFO [2025-08-09 16:01:59.055][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-09 16:01:59.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:01:59.057][biodb::testThat]
biodb.DEBUG[2025-08-09 16:01:59.060][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-08-09 16:02:02.923][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-08-09 16:02:04.181][biodb::testThat]
biodb.INFO [2025-08-09 16:02:04.182][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-09 16:02:04.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:04.184][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:04.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.195][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:04.197][biodb::testThat]
biodb.INFO [2025-08-09 16:02:04.197][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-08-09 16:02:04.198][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:04.206][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:04.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:04.311][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:04.313][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:04.314][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:04.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:04.389][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:04.392][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:04.393][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-08-09 16:02:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:04.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:04.444][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:04.446][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:04.447][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:04.458][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-09 16:02:04.495][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:04.511][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:04.514][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-08-09 16:02:04.515][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.516][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:04.517][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:04.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:04.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:04.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:04.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:04.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:04.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:04.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:04.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:04.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:04.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:04.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.574][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.584][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:04.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.598][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:04.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:04.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:04.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:04.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:04.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:04.659][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-09 16:02:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:04.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:04.680][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:04.683][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:04.684][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:04.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:04.729][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-09 16:02:04.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:04.731][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:04.734][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-08-09 16:02:04.734][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:04.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:04.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:04.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.755][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:04.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:04.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:04.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:04.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:04.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:04.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:04.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.792][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:04.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:04.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.813][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:04.814][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:04.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:04.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:04.862][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-09 16:02:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:04.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:04.899][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:04.901][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:04.902][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:04.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:04.934][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-09 16:02:04.934][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:04.936][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:04.938][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-08-09 16:02:04.939][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:04.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:04.941][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:04.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:04.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:04.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:04.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:04.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:04.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:04.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:04.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.960][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:04.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:04.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:04.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:04.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:04.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:04.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:04.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:04.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.977][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:04.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:04.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:04.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.991][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:04.992][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:04.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:04.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:04.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.039][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-09 16:02:05.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.065][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-09 16:02:05.066][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.067][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.070][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-08-09 16:02:05.071][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.072][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.073][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.111][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.117][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.168][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-09 16:02:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.194][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-09 16:02:05.195][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.196][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.199][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-08-09 16:02:05.199][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.201][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.224][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.225][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.241][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.255][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.297][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-09 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.327][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-09 16:02:05.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.329][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.333][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-08-09 16:02:05.334][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.336][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.360][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.385][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.413][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.455][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-09 16:02:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.475][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-09 16:02:05.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.477][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.481][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-08-09 16:02:05.481][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.482][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.483][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.495][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.511][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.532][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.544][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.558][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.620][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-09 16:02:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.644][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-09 16:02:05.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.646][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.650][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-08-09 16:02:05.651][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.652][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.653][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.688][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.712][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.733][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.783][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-09 16:02:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.804][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-09 16:02:05.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.806][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.809][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-08-09 16:02:05.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.812][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.823][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:05.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.859][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.873][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.885][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.930][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-09 16:02:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:05.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:05.950][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-09 16:02:05.951][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:05.952][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:05.955][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-08-09 16:02:05.956][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:05.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:05.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:05.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:05.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:05.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:05.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:05.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:05.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:05.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:05.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:05.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:05.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:05.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.007][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.010][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.074][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-09 16:02:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.097][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-09 16:02:06.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.099][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.103][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-08-09 16:02:06.103][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.105][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.153][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.156][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.166][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.173][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.233][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-09 16:02:06.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.255][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-09 16:02:06.256][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.257][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.261][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-08-09 16:02:06.262][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.263][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.290][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.314][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.389][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-09 16:02:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.413][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-09 16:02:06.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.417][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.420][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-08-09 16:02:06.422][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.423][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.443][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.465][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.484][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.507][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.563][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-09 16:02:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.600][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-09 16:02:06.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.602][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.605][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-08-09 16:02:06.606][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.608][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.620][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.627][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.634][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.651][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.718][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-09 16:02:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.738][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-09 16:02:06.739][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.740][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.744][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-08-09 16:02:06.745][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.746][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.765][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.790][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.793][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.861][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-09 16:02:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:06.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:06.881][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-09 16:02:06.882][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:06.883][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:06.887][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-08-09 16:02:06.888][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:06.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:06.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:06.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:06.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:06.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:06.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:06.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:06.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:06.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:06.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.916][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:06.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.922][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.944][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.958][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.006][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-09 16:02:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:07.031][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-09 16:02:07.032][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:07.033][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:07.036][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-08-09 16:02:07.037][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:07.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:07.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.050][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.057][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.064][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.086][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.157][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-09 16:02:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:07.177][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-09 16:02:07.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:07.179][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:07.183][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-08-09 16:02:07.184][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.185][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:07.186][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:07.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.204][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.240][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.308][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-09 16:02:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:07.327][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-09 16:02:07.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:07.329][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:07.332][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-08-09 16:02:07.333][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.334][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:07.335][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:07.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.380][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.390][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.403][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.410][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.461][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-09 16:02:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:07.481][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-09 16:02:07.482][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:07.484][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:07.486][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-08-09 16:02:07.487][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.488][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:07.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:07.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.501][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.507][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.537][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.562][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.610][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-09 16:02:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:07.630][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-09 16:02:07.630][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:07.632][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:07.634][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-08-09 16:02:07.635][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:07.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:07.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.649][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.656][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.667][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:07.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.689][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:07.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.691][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.704][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:07.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.711][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.757][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-09 16:02:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:07.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:07.792][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:07.795][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:07.796][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:07.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:07.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:07.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:07.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:07.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:07.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:07.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:07.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:07.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:07.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:08.264][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:08.266][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:08.269][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-08-09 16:02:08.270][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:08.272][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:08.274][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:08.276][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-08-09 16:02:08.277][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:08.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:08.289][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-09 16:02:08.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:08.291][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:08.294][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-08-09 16:02:08.295][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:08.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:08.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:08.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:08.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:08.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.329][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:08.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:08.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:08.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:08.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:08.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.349][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.355][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:08.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:08.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:08.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:08.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:08.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:08.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:08.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.383][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:08.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:08.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.428][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-09 16:02:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:08.468][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-09 16:02:08.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:08.470][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:08.474][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-08-09 16:02:08.475][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:08.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:08.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:08.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.495][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:08.496][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:08.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:08.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:08.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:08.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:08.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:08.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:08.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.525][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:08.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.544][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:08.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:08.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.551][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:08.552][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:08.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:08.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:08.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:08.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.598][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-09 16:02:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:08.626][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:08.629][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:08.631][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:08.632][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:08.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:08.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:08.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:08.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:08.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:08.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:08.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:08.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:09.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:09.088][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:09.090][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-09 16:02:09.091][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:09.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:09.679][biodb::testThat]
biodb.INFO [2025-08-09 16:02:09.679][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-09 16:02:09.680][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:09.681][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:09.744][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:09.746][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:09.748][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:09.749][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:09.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:09.771][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:09.773][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:09.774][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:09.775][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:09.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:09.816][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:09.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.833][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:09.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:09.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:09.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.844][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.848][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:02:09.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.889][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:09.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:09.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:09.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.899][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.903][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:09.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:09.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.932][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:09.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:09.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:09.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:09.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:09.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:02:09.956][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:09.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:09.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:09.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:09.973][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:09.975][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:09.975][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:09.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:09.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:09.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:09.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:09.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:09.987][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-08-09 16:02:09.987][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:09.989][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:09.992][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-08-09 16:02:09.993][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:09.994][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:09.994][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:09.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:09.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:09.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.006][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.043][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.064][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.111][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-08-09 16:02:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:10.131][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-08-09 16:02:10.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:10.133][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:10.137][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-08-09 16:02:10.137][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.139][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:10.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:10.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.162][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.168][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.192][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.206][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.212][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.257][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-08-09 16:02:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:10.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:10.270][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:10.272][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:10.273][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:10.285][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-08-09 16:02:10.285][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:10.286][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:10.290][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-08-09 16:02:10.291][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.292][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:10.293][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:10.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.333][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.346][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.416][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-08-09 16:02:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:10.436][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-08-09 16:02:10.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:10.438][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:10.441][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-08-09 16:02:10.442][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:10.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:10.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.493][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.512][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.519][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.520][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.557][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-08-09 16:02:10.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:10.577][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-08-09 16:02:10.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:10.579][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:10.582][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-08-09 16:02:10.583][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.584][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:10.585][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:10.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.634][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.660][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.705][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-08-09 16:02:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:10.733][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:10.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.770][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:10.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:10.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:10.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:10.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.814][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:10.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:10.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:10.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:10.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.856][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:10.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:10.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:10.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:10.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:10.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:10.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:10.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:10.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:10.901][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:10.904][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:10.905][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:10.915][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-08-09 16:02:10.916][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:10.917][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:10.920][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-08-09 16:02:10.921][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:10.922][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:10.923][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:10.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:10.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:10.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:10.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:10.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:10.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:10.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:10.935][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.948][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:10.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:10.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:10.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.961][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:10.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.970][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.974][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:10.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:10.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:10.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:10.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:10.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.037][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-08-09 16:02:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.058][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-08-09 16:02:11.058][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.060][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.062][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-08-09 16:02:11.063][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.065][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.065][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.114][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.128][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.135][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.184][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-08-09 16:02:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.203][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-08-09 16:02:11.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.205][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.208][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-08-09 16:02:11.209][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.210][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.221][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.259][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.279][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.326][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-08-09 16:02:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.346][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-08-09 16:02:11.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.348][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.351][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-08-09 16:02:11.352][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.354][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.366][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.372][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.379][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.398][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.408][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.474][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-08-09 16:02:11.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.504][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-08-09 16:02:11.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.506][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.509][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-08-09 16:02:11.510][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.556][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.594][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.615][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.662][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-08-09 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.682][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-08-09 16:02:11.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.685][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.688][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-08-09 16:02:11.688][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.694][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.695][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.706][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.741][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.744][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.764][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.811][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-08-09 16:02:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.831][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-08-09 16:02:11.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.833][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.836][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-08-09 16:02:11.837][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.838][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.839][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.858][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:11.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.888][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:11.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.956][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-08-09 16:02:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:11.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:11.974][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-08-09 16:02:11.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:11.976][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:11.979][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-08-09 16:02:11.980][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:11.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:11.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:11.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:11.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:11.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:11.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:11.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:11.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:11.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:11.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:11.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:11.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.005][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.028][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.041][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.048][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.092][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-08-09 16:02:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:12.103][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:12.105][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:12.107][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:12.108][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:12.138][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-08-09 16:02:12.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:12.140][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:12.144][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-08-09 16:02:12.144][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:12.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:12.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.200][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.219][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.219][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.226][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.263][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-08-09 16:02:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:12.282][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-08-09 16:02:12.283][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:12.284][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:12.287][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-08-09 16:02:12.288][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.289][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:12.290][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:12.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.314][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.335][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.337][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.357][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.401][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-08-09 16:02:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.411][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:12.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.429][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:12.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.472][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.481][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:12.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.511][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.521][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:12.535][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:12.536][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:12.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:12.637][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:12.639][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:12.640][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:12.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:12.644][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:12.647][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:12.648][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.712][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:12.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.729][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.742][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:12.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.792][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.810][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.814][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:12.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.843][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:12.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:12.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:12.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.853][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:12.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:12.869][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:12.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:12.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:12.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:12.884][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:12.887][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:12.888][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:12.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:12.922][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-08-09 16:02:12.923][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:12.924][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:12.927][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-08-09 16:02:12.928][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:12.929][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:12.930][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:12.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:12.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:12.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:12.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:12.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:12.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:12.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:12.941][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.948][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.949][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.955][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:12.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:12.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.978][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:12.998][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:12.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:12.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.045][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-08-09 16:02:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:13.070][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-08-09 16:02:13.071][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:13.072][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:13.076][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-08-09 16:02:13.076][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:13.078][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:13.079][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:13.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.104][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.111][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.206][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-08-09 16:02:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.216][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:13.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.233][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.243][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:13.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.275][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.285][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:13.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.317][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.327][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.331][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:13.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:13.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:13.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:13.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:13.357][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:13.360][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:13.360][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:13.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:13.372][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-08-09 16:02:13.373][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:13.374][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:13.377][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-08-09 16:02:13.378][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:13.379][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:13.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:13.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.405][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.437][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.457][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.503][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-08-09 16:02:13.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:13.523][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-08-09 16:02:13.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:13.525][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:13.529][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-08-09 16:02:13.530][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:13.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:13.532][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:13.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.582][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.597][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.655][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-08-09 16:02:13.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:13.679][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-08-09 16:02:13.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:13.681][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:13.685][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-08-09 16:02:13.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:13.686][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:13.687][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:13.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.699][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:13.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.740][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:13.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.762][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.763][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.769][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:13.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:13.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:13.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.810][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-08-09 16:02:13.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:13.822][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:13.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.842][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.853][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.859][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:13.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.891][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:02:13.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:13.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:13.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:13.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:13.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:13.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:13.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.937][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:13.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:13.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:13.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.950][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:13.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.954][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:13.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:02:13.964][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:13.965][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:13.986][biodb::testThat]
biodb.INFO [2025-08-09 16:02:13.986][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-09 16:02:13.987][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:13.988][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:14.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.057][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.058][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:14.059][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:14.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.083][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.085][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:14.086][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.127][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:14.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.145][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.156][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:02:14.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.188][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:14.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.233][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.243][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:02:14.258][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:14.259][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:14.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:14.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.272][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.274][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:14.275][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:14.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.318][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.320][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:14.320][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.377][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:14.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.395][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.405][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.409][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:14.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.437][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.456][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:14.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.484][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:14.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:14.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:14.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:14.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.498][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:14.509][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:14.510][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:14.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:14.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.524][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.526][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:14.527][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:14.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:14.591][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:14.595][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-08-09 16:02:14.596][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:14.631][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-08-09 16:02:14.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:14.632][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:14.637][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-08-09 16:02:14.639][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.640][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:14.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:14.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.663][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:14.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:14.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:14.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:14.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:14.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:14.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:14.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:14.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:14.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.700][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:14.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.704][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:14.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:14.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.740][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:14.741][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:14.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:14.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:14.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.794][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-08-09 16:02:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:14.818][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-08-09 16:02:14.819][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:14.821][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:14.826][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-08-09 16:02:14.827][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.828][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:14.829][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:14.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.849][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:14.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:14.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.856][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:14.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:14.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:14.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.884][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:14.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:14.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:14.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:14.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:14.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:14.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:14.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:14.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.951][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-08-09 16:02:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:14.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:14.971][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-08-09 16:02:14.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:14.973][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:14.977][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-08-09 16:02:14.978][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:14.979][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:14.980][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:14.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:14.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:14.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:14.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:14.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:14.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:14.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:14.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:14.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:14.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:14.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:14.998][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.010][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.037][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:15.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:15.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:15.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:15.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:15.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:15.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.098][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-08-09 16:02:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.108][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:15.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.125][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:15.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.167][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.191][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-08-09 16:02:15.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.207][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-08-09 16:02:15.232][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:15.233][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:15.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:15.297][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:15.299][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:15.300][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:15.302][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:15.304][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:15.306][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:15.307][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:15.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:15.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.391][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.407][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:15.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.438][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.449][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:15.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.481][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.491][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.495][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.511][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:15.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:15.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:15.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:15.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:15.526][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:15.529][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-08-09 16:02:15.530][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:15.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:15.578][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-08-09 16:02:15.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:15.579][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:15.582][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-08-09 16:02:15.583][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:15.584][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:15.585][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:15.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.609][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.630][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:15.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:15.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.656][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:15.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:15.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:15.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.703][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-08-09 16:02:15.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.714][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:15.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.733][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.743][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:15.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.779][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:15.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.818][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:15.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:15.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:15.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:15.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:15.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-08-09 16:02:15.842][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:15.842][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:15.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:15.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:15.856][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:15.859][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:15.860][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:15.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:15.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:15.926][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-08-09 16:02:15.926][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:15.928][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:15.931][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-08-09 16:02:15.932][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:15.933][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:15.934][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:15.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:15.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:15.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:15.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:15.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:15.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:15.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:15.945][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:15.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:15.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.952][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.953][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:15.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:15.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:15.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:15.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:15.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.982][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:15.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:15.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:15.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:15.995][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:15.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:15.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.007][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.049][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-08-09 16:02:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.067][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-08-09 16:02:16.068][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.069][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.073][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-08-09 16:02:16.074][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.075][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.076][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.093][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.100][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.123][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.187][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-08-09 16:02:16.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.207][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-08-09 16:02:16.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.209][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.213][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-08-09 16:02:16.214][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.272][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.333][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-08-09 16:02:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.351][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-08-09 16:02:16.352][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.353][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.357][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-08-09 16:02:16.358][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.359][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.360][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.377][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.405][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.418][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.425][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.431][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.432][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.469][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-08-09 16:02:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.492][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-08-09 16:02:16.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.494][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.498][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-08-09 16:02:16.499][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.545][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.557][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.564][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.608][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-08-09 16:02:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.627][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-08-09 16:02:16.628][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.629][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.633][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-08-09 16:02:16.633][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.634][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.635][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.652][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.658][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.681][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.694][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.750][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-08-09 16:02:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:16.768][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-08-09 16:02:16.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:16.770][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:16.773][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-08-09 16:02:16.774][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:16.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:16.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:16.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.793][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.801][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:16.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:16.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.823][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.838][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.847][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.855][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.895][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-08-09 16:02:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:16.906][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:16.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.925][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:16.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:16.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:16.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.935][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:02:16.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:16.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:16.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:16.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:16.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:16.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:16.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.969][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:16.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:16.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:16.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.985][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:16.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:16.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-08-09 16:02:17.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.018][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.029][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-08-09 16:02:17.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:17.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:17.066][biodb::testThat]
biodb.INFO [2025-08-09 16:02:17.067][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-09 16:02:17.067][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:17.070][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:17.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.140][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.142][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:17.143][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:17.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.167][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.169][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:17.170][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:17.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.229][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:02:17.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.279][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:17.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.325][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.335][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.339][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:02:17.354][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:17.355][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:17.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:17.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.370][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.372][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:17.372][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:17.414][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.416][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.418][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:17.419][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.487][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:17.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.510][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.520][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:17.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.553][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:17.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.595][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.605][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:17.621][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:17.622][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:17.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:17.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.637][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.638][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:17.639][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:17.800][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:17.802][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:17.804][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:17.804][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:17.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:17.864][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:17.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.883][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.885][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:17.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.927][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.938][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.941][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:17.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:17.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:17.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:17.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:17.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:17.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:17.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.970][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:17.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:17.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:17.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:17.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:17.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:17.995][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:17.996][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:18.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:18.073][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:18.074][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:18.075][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:18.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:18.079][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:18.081][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:18.082][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:18.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:18.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.158][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.168][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:18.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.207][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.222][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:18.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.251][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.264][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:18.280][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:18.281][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:18.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:18.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:18.295][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:18.297][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:18.298][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:18.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.357][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:18.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.374][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.398][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.402][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:18.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.432][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.447][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:18.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.476][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.490][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:18.502][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:18.502][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:18.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:18.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:18.525][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:18.528][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:18.528][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:18.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.592][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:18.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.622][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.639][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.643][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:18.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.671][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.690][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:02:18.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.720][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:18.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:18.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:18.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.731][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:18.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:02:18.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:18.755][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.784][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:18.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:18.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.796][ef$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:18.797][biodb::testThat]
biodb.INFO [2025-08-09 16:02:18.798][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-08-09 16:02:18.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:18.800][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:18.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:18.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:18.875][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:18.890][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-09 16:02:18.891][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:18.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:18.904][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-08-09 16:02:18.905][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:18.907][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:18.912][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-08-09 16:02:18.913][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:18.914][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:18.915][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:18.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:18.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:18.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:18.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:18.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:18.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:18.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:18.927][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:18.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:18.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:18.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.934][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:18.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:18.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.941][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:18.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:18.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:18.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:18.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:18.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:18.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:18.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:18.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:18.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:18.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.970][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:18.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:18.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:18.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:18.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:18.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:18.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:18.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:18.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:18.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:18.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:18.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:18.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:18.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.048][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-08-09 16:02:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:19.076][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-08-09 16:02:19.077][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:19.078][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:19.101][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-08-09 16:02:19.102][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:19.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:19.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.122][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.129][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.168][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.204][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.256][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-08-09 16:02:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:19.281][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-08-09 16:02:19.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:19.283][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:19.290][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-08-09 16:02:19.291][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.292][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:19.293][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:19.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.343][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.378][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.422][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-08-09 16:02:19.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:19.445][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-08-09 16:02:19.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:19.448][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:19.456][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-08-09 16:02:19.457][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.458][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:19.459][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:19.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.471][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.478][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.513][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.577][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-08-09 16:02:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.599][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:19.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.616][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:19.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:19.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:19.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.626][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:19.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.668][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:19.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:19.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:19.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.687][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-09 16:02:19.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.714][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:19.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:19.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:19.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:19.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-09 16:02:19.752][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:19.753][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:19.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:19.765][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:19.767][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:19.770][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-09 16:02:19.771][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:19.785][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-08-09 16:02:19.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:19.787][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:19.793][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-08-09 16:02:19.794][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:19.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:19.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.808][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:19.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.846][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.863][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:19.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:19.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:19.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.923][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-08-09 16:02:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:19.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:19.943][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-08-09 16:02:19.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:19.945][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:19.948][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-08-09 16:02:19.949][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:19.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:19.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:19.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:19.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:19.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:19.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:19.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:19.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:19.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:19.966][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.984][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:19.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:19.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:19.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:19.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.013][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.081][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-08-09 16:02:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:20.106][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-08-09 16:02:20.106][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:20.108][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:20.111][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-08-09 16:02:20.112][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:20.113][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:20.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:20.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.132][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.167][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.244][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-08-09 16:02:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:20.264][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-08-09 16:02:20.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:20.266][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:20.269][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-08-09 16:02:20.270][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:20.271][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:20.272][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:20.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.318][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.352][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.383][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.429][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-08-09 16:02:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:20.456][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-08-09 16:02:20.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:20.459][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:20.462][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-08-09 16:02:20.463][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:20.464][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:20.465][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:20.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.490][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.519][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.522][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.525][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.539][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.546][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.604][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-08-09 16:02:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:20.629][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-08-09 16:02:20.630][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:20.632][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:20.637][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-08-09 16:02:20.637][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:20.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:20.640][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:20.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.652][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.688][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.707][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.716][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.768][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-08-09 16:02:20.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:20.803][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-08-09 16:02:20.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:20.805][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:20.809][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-08-09 16:02:20.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:20.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:20.812][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:20.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.834][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.842][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:20.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.874][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.895][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:20.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:20.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.951][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-08-09 16:02:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:20.968][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:20.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:20.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:20.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:20.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:20.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:20.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:20.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:20.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:20.995][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:20.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:20.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:20.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:20.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:20.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-09 16:02:21.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.040][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:21.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:21.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:21.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:21.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-09 16:02:21.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.095][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:21.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:21.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:21.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.106][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:21.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-09 16:02:21.122][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:21.123][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:21.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:21.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:21.139][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:21.142][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-09 16:02:21.143][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:21.156][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-08-09 16:02:21.158][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:21.162][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:21.164][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-08-09 16:02:21.166][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.167][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:21.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:21.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.226][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.245][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.253][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.266][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.309][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-08-09 16:02:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:21.335][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-08-09 16:02:21.336][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:21.338][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:21.341][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-08-09 16:02:21.343][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.346][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:21.349][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:21.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.364][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.372][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.380][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.407][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.432][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.496][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-08-09 16:02:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:21.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:21.511][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:21.513][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-09 16:02:21.513][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:21.524][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-08-09 16:02:21.525][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:21.526][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:21.529][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-08-09 16:02:21.530][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:21.532][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:21.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.556][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.586][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.612][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.659][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-08-09 16:02:21.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:21.679][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-08-09 16:02:21.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:21.681][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:21.685][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-08-09 16:02:21.686][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.687][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:21.688][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:21.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.699][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.713][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.742][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.748][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.820][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-08-09 16:02:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:21.840][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-08-09 16:02:21.841][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:21.842][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:21.846][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-08-09 16:02:21.847][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:21.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:21.849][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:21.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.862][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.871][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:21.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:21.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.878][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:21.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:21.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:21.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.902][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:21.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.906][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:21.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:21.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:21.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.928][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:21.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:21.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:21.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.975][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-08-09 16:02:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:21.986][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:21.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:21.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:21.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:21.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:21.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:21.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:21.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.007][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-09 16:02:22.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.058][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.074][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-09 16:02:22.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.106][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.123][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-09 16:02:22.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:22.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:22.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:22.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.173][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.175][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:22.175][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:22.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.203][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.205][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:22.206][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.248][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:22.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.266][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.275][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:02:22.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.321][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.333][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.337][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:22.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.366][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.379][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:02:22.390][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:22.391][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:22.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:22.403][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.405][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.406][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:22.407][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:22.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.453][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.455][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:22.456][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.520][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:22.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.537][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:22.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.584][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.594][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.598][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:22.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.626][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.637][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.641][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:22.653][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:22.654][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:22.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:22.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.675][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.677][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:22.678][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:22.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:22.845][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:22.847][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:22.848][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:22.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:22.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:22.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.932][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:22.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:22.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:22.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:22.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:22.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:22.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:22.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.977][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:22.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:22.978][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:22.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.986][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:22.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.990][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:23.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.019][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:23.049][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:23.050][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:23.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:23.083][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:23.085][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:23.088][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-09 16:02:23.089][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:23.173][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-08-09 16:02:23.174][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:23.175][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:23.178][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-08-09 16:02:23.179][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:23.181][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:23.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:23.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:23.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:23.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.231][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.245][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.252][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.300][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-08-09 16:02:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:23.340][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-08-09 16:02:23.341][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:23.342][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:23.345][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-08-09 16:02:23.346][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.347][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:23.348][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:23.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.366][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.367][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.373][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:23.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:23.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.399][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.400][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.402][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.406][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.423][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.468][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-08-09 16:02:23.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:23.489][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-08-09 16:02:23.490][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:23.491][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:23.493][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-08-09 16:02:23.494][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:23.496][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:23.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.516][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:23.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:23.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:23.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:23.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:23.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.541][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.542][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:23.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:23.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:23.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.610][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-08-09 16:02:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.621][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:23.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.645][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:23.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.686][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.687][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.696][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-09 16:02:23.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.729][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.740][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.744][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-09 16:02:23.755][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:23.756][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:23.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:23.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:23.770][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:23.775][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-09 16:02:23.776][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:23.839][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:23.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.857][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.869][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.873][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:23.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.910][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:23.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.951][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:23.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:23.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:23.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.961][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:23.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:23.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:23.976][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:23.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:23.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:23.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:23.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:23.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:23.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:23.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:23.991][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:23.994][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-09 16:02:23.995][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:23.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:23.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:23.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.027][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-08-09 16:02:24.028][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.029][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.031][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-08-09 16:02:24.032][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.046][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.059][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.082][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.103][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.104][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.156][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-08-09 16:02:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.175][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-08-09 16:02:24.176][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.177][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.179][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-08-09 16:02:24.180][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.200][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.201][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.242][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.295][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-08-09 16:02:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.315][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-08-09 16:02:24.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.317][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.320][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-08-09 16:02:24.321][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.322][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.323][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.335][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.341][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.371][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.440][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-08-09 16:02:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.478][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-08-09 16:02:24.479][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.480][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.483][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-08-09 16:02:24.484][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.498][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.505][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.540][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.606][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-08-09 16:02:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.630][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-08-09 16:02:24.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.633][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.636][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-08-09 16:02:24.637][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.638][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.639][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.650][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.657][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.663][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.684][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.690][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.756][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-08-09 16:02:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.776][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-08-09 16:02:24.777][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.778][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.781][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-08-09 16:02:24.782][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.783][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.784][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.834][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.837][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.855][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.863][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:24.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:24.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.907][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-08-09 16:02:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:24.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:24.927][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-08-09 16:02:24.927][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:24.929][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:24.932][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-08-09 16:02:24.933][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:24.934][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:24.935][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:24.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:24.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:24.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:24.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:24.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:24.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:24.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:24.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.973][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.980][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.981][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.984][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.987][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:24.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:24.998][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:24.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.006][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.052][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-08-09 16:02:25.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.073][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-08-09 16:02:25.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.075][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.078][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-08-09 16:02:25.079][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.081][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.093][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.100][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.136][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.149][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.156][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.157][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.201][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-08-09 16:02:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.222][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-08-09 16:02:25.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.223][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.226][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-08-09 16:02:25.227][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.228][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.229][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.280][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.348][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-08-09 16:02:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.368][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-08-09 16:02:25.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.371][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.379][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-08-09 16:02:25.380][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.381][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.382][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.427][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.428][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.430][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.444][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.498][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-08-09 16:02:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.518][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-08-09 16:02:25.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.520][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.523][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-08-09 16:02:25.524][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.526][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.544][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.575][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.595][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.602][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.603][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.648][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-08-09 16:02:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.782][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-08-09 16:02:25.782][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.783][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.786][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-08-09 16:02:25.787][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.807][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:25.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.837][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.851][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.913][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-08-09 16:02:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:25.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:25.952][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-08-09 16:02:25.952][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:25.954][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:25.956][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-08-09 16:02:25.957][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:25.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:25.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:25.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:25.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:25.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:25.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:25.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:25.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:25.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:25.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.978][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.979][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:25.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:25.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:25.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.015][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.029][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.036][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.082][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-08-09 16:02:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:26.103][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-08-09 16:02:26.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:26.105][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:26.108][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-08-09 16:02:26.109][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:26.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:26.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:26.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.122][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.134][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.142][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.166][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.185][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.231][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-08-09 16:02:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:26.251][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-08-09 16:02:26.252][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:26.253][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:26.256][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-08-09 16:02:26.257][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:26.258][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:26.259][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:26.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.271][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.306][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.309][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.330][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.331][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.383][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-08-09 16:02:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:26.403][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-08-09 16:02:26.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:26.405][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:26.407][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-08-09 16:02:26.408][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:26.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:26.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:26.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.428][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.457][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.478][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.525][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-08-09 16:02:26.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:26.545][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-08-09 16:02:26.546][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:26.547][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:26.550][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-08-09 16:02:26.551][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:26.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:26.553][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:26.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.571][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.572][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.578][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.602][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.616][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.623][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.676][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-08-09 16:02:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:26.696][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-08-09 16:02:26.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:26.698][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:26.700][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-08-09 16:02:26.701][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:26.702][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:26.703][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:26.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.714][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.721][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:26.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.754][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:26.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.823][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-08-09 16:02:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:26.851][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:26.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.869][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:26.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:26.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:26.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:26.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.916][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:26.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:26.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:26.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.930][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:26.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:26.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:26.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:26.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:26.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:26.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:26.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:26.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.958][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:26.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:26.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:26.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:26.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.972][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:26.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:26.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:26.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:26.984][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:26.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:27.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:27.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.017][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.021][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-09 16:02:27.022][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.102][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:27.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.120][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.121][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:27.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.168][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-09 16:02:27.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.210][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.220][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.224][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-09 16:02:27.235][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:27.236][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:27.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:27.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.250][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.253][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-09 16:02:27.254][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.398][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:27.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.417][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.427][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.431][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-09 16:02:27.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.459][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-09 16:02:27.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.504][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-09 16:02:27.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:27.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:27.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:27.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.546][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.548][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-09 16:02:27.549][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:27.590][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.592][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.594][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-09 16:02:27.595][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.661][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:27.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.679][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.689][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-09 16:02:27.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.718][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-09 16:02:27.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.760][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.760][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.761][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.770][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.773][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-09 16:02:27.784][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:27.785][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:27.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:27.814][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.816][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.818][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:27.819][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:27.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:27.842][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:27.844][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:27.844][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:27.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:27.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:27.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.909][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.918][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-09 16:02:27.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.948][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:27.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:27.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:27.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:27.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:27.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:27.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:27.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.988][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:27.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:27.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:27.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:27.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:27.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:27.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:27.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-09 16:02:28.014][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:28.015][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:28.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:28.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:28.030][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:28.031][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:28.032][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:28.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:28.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:28.075][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:28.077][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:28.078][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:28.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:28.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.180][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.190][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.195][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:28.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.223][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.238][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:28.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.266][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.281][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:28.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:28.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:28.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:28.305][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:28.307][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:28.309][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:28.310][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:28.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:28.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:28.472][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:28.474][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:28.475][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:28.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.533][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:28.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.550][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:28.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.592][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.602][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.606][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:28.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.633][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.649][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.653][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:28.664][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:28.665][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:28.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:28.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:28.696][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:28.698][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-09 16:02:28.699][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:28.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:28.813][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:28.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.834][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.846][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:28.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.901][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-09 16:02:28.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:28.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:28.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:28.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:28.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:28.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:28.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.969][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:28.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:28.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:28.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:28.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-09 16:02:29.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:29.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:29.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:29.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:29.030][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:29.036][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-09 16:02:29.037][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:29.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.097][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:29.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.115][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:29.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.156][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.166][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:29.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.204][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.214][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-09 16:02:29.230][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:29.231][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:29.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:29.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:29.245][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:29.248][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-09 16:02:29.249][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:29.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:29.816][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:29.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.834][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.844][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:29.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.876][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.901][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-09 16:02:29.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:29.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:29.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:29.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:29.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:29.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:29.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.918][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:29.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:29.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:29.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.927][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:29.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-09 16:02:29.942][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:29.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:30.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:30.018][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:30.022][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-09 16:02:30.023][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:30.129][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-08-09 16:02:30.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:30.131][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:30.135][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-08-09 16:02:30.135][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.136][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:30.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:30.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.156][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.183][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.190][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.198][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.260][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-08-09 16:02:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:30.279][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-08-09 16:02:30.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:30.281][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:30.285][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-08-09 16:02:30.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:30.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:30.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.338][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.352][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.402][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-08-09 16:02:30.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.413][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:30.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.431][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:30.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:30.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:30.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.441][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:30.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.478][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:30.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:30.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:30.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.488][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.491][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:30.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.519][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:30.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:30.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:30.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.529][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.533][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-09 16:02:30.545][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:30.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:30.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:30.558][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:30.560][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:30.565][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-09 16:02:30.566][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:30.580][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-08-09 16:02:30.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:30.582][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:30.585][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-08-09 16:02:30.586][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.587][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:30.588][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:30.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.606][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.613][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.660][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.711][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-08-09 16:02:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:30.748][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-08-09 16:02:30.749][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:30.750][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:30.753][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-08-09 16:02:30.754][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:30.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:30.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:30.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.773][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.805][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.825][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:30.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.869][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-08-09 16:02:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:30.898][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:30.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.916][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:30.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:30.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:30.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-09 16:02:30.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.963][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:30.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:30.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:30.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.972][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:30.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.976][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:30.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:30.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:30.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:30.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:30.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:30.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:30.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:30.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.002][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.017][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.027][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:31.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:31.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:31.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:31.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:31.042][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:31.045][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-09 16:02:31.045][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:31.057][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-08-09 16:02:31.058][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:31.059][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:31.062][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-08-09 16:02:31.063][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:31.065][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:31.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.113][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.134][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.202][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-08-09 16:02:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:31.221][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-08-09 16:02:31.221][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:31.223][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:31.225][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-08-09 16:02:31.226][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:31.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:31.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.277][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.343][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-08-09 16:02:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:31.362][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-08-09 16:02:31.363][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:31.364][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:31.367][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-08-09 16:02:31.368][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.369][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:31.370][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:31.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.418][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.422][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.448][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.491][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-08-09 16:02:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:31.511][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-08-09 16:02:31.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:31.513][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:31.516][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-08-09 16:02:31.517][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.518][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:31.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:31.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.531][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.538][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.545][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.573][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.594][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.601][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:31.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.640][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-08-09 16:02:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.677][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:31.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.695][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.704][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-09 16:02:31.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.735][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-09 16:02:31.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.778][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.792][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-09 16:02:31.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:31.804][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:31.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:31.834][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:31.836][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:31.838][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:31.839][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:31.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:31.843][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:31.845][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:31.846][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:31.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:31.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:31.907][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:31.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.932][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:31.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:31.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:31.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:31.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:31.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:31.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:31.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.974][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:31.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:31.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:31.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:31.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:31.999][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:32.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.017][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.028][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:32.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:32.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:32.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:32.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:32.059][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:32.061][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:32.062][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:32.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.142][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.157][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:32.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.192][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:32.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.233][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.243][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:32.259][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:32.260][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:32.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:32.272][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:32.274][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:32.277][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:32.277][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.339][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:32.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.357][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.368][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:32.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.401][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.416][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:02:32.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.452][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:32.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:32.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:32.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.462][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:32.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.466][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:02:32.477][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:32.478][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:32.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:32.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:32.510][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:32.513][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-09 16:02:32.515][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:32.568][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-08-09 16:02:32.569][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:32.570][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:32.573][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-08-09 16:02:32.574][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.575][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:32.576][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:32.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.589][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.603][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.631][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.652][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.653][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.707][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-08-09 16:02:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:32.728][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-08-09 16:02:32.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:32.730][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:32.734][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-08-09 16:02:32.735][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:32.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:32.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.755][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.784][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.791][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.812][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.859][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-08-09 16:02:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:32.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:32.880][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-08-09 16:02:32.880][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:32.881][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:32.885][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-08-09 16:02:32.886][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:32.887][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:32.888][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:32.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:32.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:32.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:32.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:32.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:32.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:32.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:32.900][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.914][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:32.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:32.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.947][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.011][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-08-09 16:02:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:33.037][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-08-09 16:02:33.039][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:33.040][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:33.047][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-08-09 16:02:33.048][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:33.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:33.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.068][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.075][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.082][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.110][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.124][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.130][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.131][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.176][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-08-09 16:02:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:33.203][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-08-09 16:02:33.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:33.205][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:33.208][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-08-09 16:02:33.209][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.210][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:33.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:33.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.258][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.277][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.325][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-08-09 16:02:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.355][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:33.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.373][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:33.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:33.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:33.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.387][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.388][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:33.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.416][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:33.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:33.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:33.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:33.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.463][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:33.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:33.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:33.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:33.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.477][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:33.488][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:33.488][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:33.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:33.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:33.503][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:33.508][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-09 16:02:33.509][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:33.564][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-08-09 16:02:33.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:33.566][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:33.569][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-08-09 16:02:33.570][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.571][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:33.572][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:33.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.591][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.598][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.623][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.698][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-08-09 16:02:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:33.717][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-08-09 16:02:33.718][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:33.719][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:33.722][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-08-09 16:02:33.723][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:33.725][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:33.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.748][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.770][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.790][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.836][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-08-09 16:02:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:33.856][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-08-09 16:02:33.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:33.858][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:33.862][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-08-09 16:02:33.863][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:33.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:33.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:33.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:33.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:33.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:33.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:33.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:33.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.912][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.938][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.983][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-08-09 16:02:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:33.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:33.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:33.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:33.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.002][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-08-09 16:02:34.003][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.004][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.008][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-08-09 16:02:34.009][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.010][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.022][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.059][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.072][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.079][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.126][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-08-09 16:02:34.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.146][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-08-09 16:02:34.147][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.148][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.152][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-08-09 16:02:34.152][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.167][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.180][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.187][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.210][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.222][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.273][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-08-09 16:02:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.292][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-08-09 16:02:34.293][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.294][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.298][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-08-09 16:02:34.299][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.300][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.301][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.320][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.326][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.417][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-08-09 16:02:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.436][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-08-09 16:02:34.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.438][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.442][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-08-09 16:02:34.442][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.509][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.553][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-08-09 16:02:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.572][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-08-09 16:02:34.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.574][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.577][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-08-09 16:02:34.577][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.578][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.579][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.591][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.597][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.598][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.603][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.624][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.693][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-08-09 16:02:34.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.711][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-08-09 16:02:34.712][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.713][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.717][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-08-09 16:02:34.718][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.720][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.731][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.757][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.758][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.760][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.773][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.822][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-08-09 16:02:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.841][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-08-09 16:02:34.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.843][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.846][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-08-09 16:02:34.847][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.849][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:34.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.867][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:34.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.897][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.962][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-08-09 16:02:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:34.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:34.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:34.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:34.982][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-08-09 16:02:34.983][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:34.984][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:34.988][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-08-09 16:02:34.989][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:34.990][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:34.991][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:34.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:34.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:34.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:34.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:34.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.002][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.015][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.029][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.036][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.037][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.039][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.102][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-08-09 16:02:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.127][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-08-09 16:02:35.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.129][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.133][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-08-09 16:02:35.134][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.135][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.147][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.181][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.193][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.200][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.245][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-08-09 16:02:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.264][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-08-09 16:02:35.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.265][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.268][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-08-09 16:02:35.269][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.270][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.271][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.294][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.318][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.331][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.345][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.352][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.389][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-08-09 16:02:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.409][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-08-09 16:02:35.409][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.411][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.415][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-08-09 16:02:35.416][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.417][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.418][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.436][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.481][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.533][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-08-09 16:02:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.553][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-08-09 16:02:35.554][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.555][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.559][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-08-09 16:02:35.560][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.573][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.587][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.592][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.614][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.677][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-08-09 16:02:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.696][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-08-09 16:02:35.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.698][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.701][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-08-09 16:02:35.702][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.703][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.704][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.715][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.716][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.721][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.749][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.769][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.776][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.819][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-08-09 16:02:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.839][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-08-09 16:02:35.840][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.842][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.845][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-08-09 16:02:35.846][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.847][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.848][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.871][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:35.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:35.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.895][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:35.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.915][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:35.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.959][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-08-09 16:02:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:35.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:35.979][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-08-09 16:02:35.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:35.981][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:35.985][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-08-09 16:02:35.985][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:35.986][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:35.987][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:35.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:35.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:35.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:35.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:35.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:35.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:35.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:35.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:35.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.005][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.033][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.100][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-08-09 16:02:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.119][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-08-09 16:02:36.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.120][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.125][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-08-09 16:02:36.125][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.126][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.151][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.174][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.237][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-08-09 16:02:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.255][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-08-09 16:02:36.256][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.257][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.260][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-08-09 16:02:36.261][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.262][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.263][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.382][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-08-09 16:02:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.401][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-08-09 16:02:36.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.403][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.407][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-08-09 16:02:36.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.428][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.456][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.468][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.475][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.526][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-08-09 16:02:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.544][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-08-09 16:02:36.545][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.546][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.549][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-08-09 16:02:36.550][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.563][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.570][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.597][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.616][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.659][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-08-09 16:02:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.678][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-08-09 16:02:36.679][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.680][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.683][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-08-09 16:02:36.684][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.685][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.686][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.698][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.705][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.712][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.754][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.805][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-08-09 16:02:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.825][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-08-09 16:02:36.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.827][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.830][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-08-09 16:02:36.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.851][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.858][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:36.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.879][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.898][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.941][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-08-09 16:02:36.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:36.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:36.960][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-08-09 16:02:36.961][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:36.962][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:36.964][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-08-09 16:02:36.965][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:36.966][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:36.967][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:36.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:36.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:36.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:36.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:36.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:36.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:36.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:36.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.994][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:37.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:37.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:37.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:37.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.025][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:37.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:37.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:37.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:37.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:37.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:37.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:37.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.092][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-08-09 16:02:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-09 16:02:37.112][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-08-09 16:02:37.113][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-09 16:02:37.114][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-09 16:02:37.117][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-08-09 16:02:37.118][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-09 16:02:37.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-09 16:02:37.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-09 16:02:37.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.132][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.138][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:37.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:37.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.144][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:37.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:37.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:37.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:37.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:37.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.164][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.165][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:37.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.167][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:37.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:37.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-09 16:02:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:37.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:37.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:37.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.187][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:37.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:37.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-09 16:02:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:37.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.237][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-08-09 16:02:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.283][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:37.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.302][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:37.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.344][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.345][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.346][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.355][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.359][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:37.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.386][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.400][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:37.412][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:37.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:37.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:37.424][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:37.427][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:37.430][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-09 16:02:37.431][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:37.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:37.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.539][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:37.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.583][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.593][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:37.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.624][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.634][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:37.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:37.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:37.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:37.680][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:37.682][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:37.686][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-09 16:02:37.687][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:37.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:37.839][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:37.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.857][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:37.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.900][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:37.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.942][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:37.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:37.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:37.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.960][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:37.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.964][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:37.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:37.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-09 16:02:37.976][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:37.976][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:37.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:37.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:37.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:37.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:37.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:37.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:37.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:37.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:37.990][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:37.994][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-09 16:02:37.995][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:38.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.075][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:38.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.093][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-09 16:02:38.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.134][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.144][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.148][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:38.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.175][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.197][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-09 16:02:38.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:38.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:38.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:38.223][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:38.225][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:38.227][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-09 16:02:38.228][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:38.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.324][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:38.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.342][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.352][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-09 16:02:38.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.386][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.387][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-09 16:02:38.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.430][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.452][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-09 16:02:38.464][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:38.465][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:38.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:38.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:38.496][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:38.498][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:38.499][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:38.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:38.503][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:38.505][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:38.505][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:38.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.567][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:38.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.587][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.598][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:38.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.631][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.642][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:38.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.676][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.698][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:38.711][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:38.712][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:38.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:38.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:38.726][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:38.728][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:38.729][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:38.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.791][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:38.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.809][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:38.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.854][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.869][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:38.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.898][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:38.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:38.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:38.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:38.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:38.926][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:38.926][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:38.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:38.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:38.941][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:38.943][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:38.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:38.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:38.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:38.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:38.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:38.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:38.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:38.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:38.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:38.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.012][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:39.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.031][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:39.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.075][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.086][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-09 16:02:39.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.119][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.129][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.133][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-09 16:02:39.146][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:39.147][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:39.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:39.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:39.179][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:39.182][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-09 16:02:39.183][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:39.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.344][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:39.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.363][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.364][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-09 16:02:39.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.405][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.406][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.415][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-09 16:02:39.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.455][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:39.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:39.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:39.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.465][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:39.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.469][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-09 16:02:39.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:39.482][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:39.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:39.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:39.496][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:39.501][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-09 16:02:39.502][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:39.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:39.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:39.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:39.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:39.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:39.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:39.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:39.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.115][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:40.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.133][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.143][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.147][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-09 16:02:40.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.175][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.190][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-09 16:02:40.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.226][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.236][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.240][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-09 16:02:40.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:40.253][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:40.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:40.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:40.270][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:40.274][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-09 16:02:40.276][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:40.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.387][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:40.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.406][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.416][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-09 16:02:40.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.448][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-09 16:02:40.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.498][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-09 16:02:40.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-09 16:02:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-09 16:02:40.521][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:40.522][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:40.552][biodb::testThat]
biodb.INFO [2025-08-09 16:02:40.552][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-08-09 16:02:40.553][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-09 16:02:40.554][biodb::testThat]
biodb.TRACE[2025-08-09 16:02:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-09 16:02:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:40.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:40.616][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:40.618][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:40.619][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:40.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:40.640][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:40.642][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:40.644][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:40.644][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:40.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:40.685][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:40.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:40.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:40.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:40.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:40.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:40.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:40.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.780][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:40.781][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:40.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:40.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:40.783][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:40.784][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.787][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.793][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.811][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:40.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.841][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.846][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.856][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:40.857][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:40.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.860][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.866][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.875][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.881][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.881][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.883][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.889][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:40.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-09 16:02:41.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.096][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.097][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:41.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:41.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:41.100][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.104][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.111][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.125][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.134][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.141][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.144][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.160][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.163][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.185][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.186][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.187][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.190][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.196][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.213][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.221][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:02:41.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.572][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.573][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:41.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:41.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:41.575][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:41.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.586][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.605][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.614][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:41.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.656][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:41.657][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:41.679][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.689][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.690][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.696][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.712][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.722][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:41.839][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:41.839][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:41.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:41.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:41.855][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:41.856][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:41.857][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:41.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:41.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:41.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:41.899][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:41.901][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:41.902][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:41.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:41.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:41.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:41.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:41.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:41.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:41.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:41.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:41.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:41.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:41.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.056][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.057][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:42.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:42.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:42.059][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.063][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.069][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.081][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.087][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.090][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.099][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.123][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.126][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.132][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.133][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.137][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.143][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.155][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.164][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.170][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:42.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.374][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.375][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:42.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:42.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:42.377][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.386][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.398][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.404][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.410][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.411][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.415][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.432][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.438][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.448][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.448][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.452][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.458][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.459][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.471][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.477][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.480][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.486][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:42.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.686][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.687][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:42.687][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:42.688][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:42.689][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:42.689][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.690][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.693][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.693][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.726][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.732][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.733][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:42.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.755][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.756][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.764][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:42.765][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:42.766][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.769][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.789][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.790][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.792][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.798][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:42.908][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:42.908][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:42.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:42.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:42.923][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:42.925][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:42.925][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:42.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:42.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:42.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:42.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:42.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:42.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:42.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:42.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:42.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:42.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:42.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:43.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:43.080][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:43.082][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:43.083][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:43.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:43.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:43.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.226][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.227][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:43.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:43.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:43.229][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.229][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.232][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.233][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.238][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.255][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.267][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.268][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.285][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.299][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.300][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.301][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.322][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.327][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.330][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.336][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-09 16:02:43.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.536][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.537][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:43.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:43.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:43.539][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.543][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.561][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.567][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.579][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.603][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.616][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:43.616][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:43.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.620][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.621][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.650][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-09 16:02:43.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:43.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:43.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:43.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:43.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:43.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:43.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.847][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.848][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:43.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:43.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:43.850][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:43.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.877][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.883][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.886][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.889][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.895][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:43.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.908][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.914][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.922][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:43.923][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:43.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:43.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:43.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:43.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:43.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.957][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:43.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:43.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:44.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:44.073][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:44.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:44.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:44.092][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:44.094][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-09 16:02:44.095][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:44.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:44.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:44.118][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:44.119][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-09 16:02:44.120][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:44.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:44.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:44.158][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:44.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.249][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.250][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:44.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:44.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:44.252][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.252][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.256][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.261][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.271][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.273][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.279][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.288][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.288][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.298][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.330][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.331][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.333][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:44.334][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:44.335][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.352][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.353][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.359][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.368][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-09 16:02:44.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.573][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.573][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:44.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:44.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:44.576][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.579][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.603][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.618][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.650][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.651][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.653][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.654][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.674][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.682][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.691][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:02:44.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:44.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:44.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:44.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:44.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:44.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:44.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.905][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.906][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:44.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:44.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:44.908][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:44.909][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.912][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.936][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.945][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.946][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.952][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:44.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:44.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:44.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:44.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:44.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:44.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:44.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:44.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:44.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:44.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:44.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.988][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.989][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:44.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.991][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:44.992][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:44.992][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:44.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:44.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:44.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:44.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:44.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:44.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.016][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.025][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:45.136][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:45.137][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:45.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:45.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:45.152][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:45.153][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-09 16:02:45.154][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:45.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:45.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:45.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:45.200][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:45.202][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-09 16:02:45.203][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:45.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:45.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:45.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:45.260][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:45.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.347][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.348][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:45.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:45.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:45.350][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.351][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.360][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.369][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.370][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.372][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.378][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.381][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.387][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.388][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.390][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.411][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.424][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.429][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.430][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.433][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.434][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.437][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.464][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.467][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.470][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:45.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.688][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.689][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:45.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:45.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:45.691][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.692][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.701][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.720][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.730][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.731][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.733][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.769][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.770][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:45.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.772][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.773][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:45.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.777][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.778][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.795][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.811][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:45.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:45.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:45.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:45.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:45.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:45.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:45.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:45.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.025][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.026][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:46.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:46.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:46.028][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.032][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.050][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.056][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.065][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.066][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.072][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.097][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.104][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.110][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.111][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.113][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:46.114][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:46.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.118][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.138][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.141][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.147][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:46.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:46.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:46.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:46.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:46.272][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:46.274][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-09 16:02:46.275][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:46.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-09 16:02:46.433][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:46.435][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:46.436][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-09 16:02:46.437][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:46.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:46.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:46.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.589][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.589][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:46.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:46.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:46.592][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.619][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.622][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.628][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.628][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.648][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.651][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.656][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.665][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.666][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.668][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.669][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.669][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.678][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.704][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-09 16:02:46.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:46.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:46.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:46.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:46.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:46.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:46.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.906][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.907][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:46.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:46.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:46.909][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:46.910][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.936][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.945][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.946][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.951][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.956][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:46.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:46.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:46.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.968][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:46.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:46.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.974][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:46.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:46.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:46.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:46.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.982][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.983][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:46.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.985][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:46.986][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:46.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:46.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:46.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.989][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:46.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:46.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:46.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:46.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:46.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:46.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:46.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.014][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.017][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.023][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:47.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-09 16:02:47.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.217][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.222][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:47.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:47.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:47.225][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.234][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.243][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.245][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.251][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.260][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.260][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.263][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.271][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.278][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.280][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.281][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.289][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.298][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.299][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:47.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.301][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:47.302][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:47.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.320][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.326][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.335][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:47.446][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:47.447][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:47.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:47.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:47.500][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:47.501][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:47.502][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:47.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:47.506][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:47.508][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:47.509][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:47.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:47.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:47.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:47.565][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:47.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.647][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.648][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:47.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:47.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:47.650][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.674][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.682][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.690][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.693][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.717][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.725][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.726][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.727][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.729][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.738][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.739][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.746][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.749][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.752][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.760][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:47.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:47.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:47.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:47.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:47.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:47.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:47.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:47.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.965][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.966][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:47.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:47.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:47.968][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:47.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:47.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:47.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:47.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:47.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:47.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:47.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:47.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:47.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:47.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:47.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:47.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:47.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:47.996][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:47.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:47.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.006][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.015][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.034][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.037][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.044][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.045][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.048][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.054][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.082][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:02:48.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.296][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.297][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:48.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:48.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:48.300][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.301][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.311][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.330][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.331][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.346][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.349][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.350][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.355][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.368][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.374][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.377][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.384][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:48.385][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:48.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.410][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.413][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.531][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:48.532][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:48.533][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:48.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:48.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:48.548][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:48.550][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:48.551][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:48.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:48.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:48.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:48.614][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:48.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.701][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.702][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:48.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:48.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:48.704][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.708][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.715][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.733][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.739][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.743][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.752][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.765][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.772][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.782][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.783][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:48.783][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.787][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.787][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.793][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.817][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.826][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:48.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:48.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:48.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:48.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:48.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:48.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:48.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:48.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:48.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:48.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.038][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.038][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:49.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:49.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:49.041][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.041][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.072][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.081][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.090][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.103][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.110][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.119][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:49.120][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:49.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.144][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.152][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:49.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.356][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.356][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:49.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:49.358][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:49.358][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.362][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.363][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.368][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.380][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.387][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.390][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.406][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.418][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.425][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.428][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.431][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.432][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.434][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:49.434][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:49.435][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.438][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.444][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.453][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.460][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.469][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:49.577][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:49.578][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:49.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:49.590][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:49.592][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:49.594][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:49.595][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:49.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:49.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:49.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:49.652][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:49.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.741][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.742][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:49.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:49.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:49.744][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.745][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.748][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.773][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.776][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.783][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.786][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.798][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.803][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.807][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.809][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.818][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.818][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:49.819][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.822][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.846][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.855][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:49.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:49.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-09 16:02:49.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:49.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:49.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:49.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:49.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:49.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:49.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.065][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.066][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:50.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:50.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:50.068][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.072][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.098][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.108][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.111][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.118][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.136][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.139][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.145][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:50.146][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:50.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.164][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.170][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.183][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-09 16:02:50.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.377][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.378][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:50.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:50.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:50.380][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.384][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.412][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.425][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.426][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.432][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.444][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.452][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.458][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:50.459][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:50.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.476][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.490][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:50.600][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:50.600][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:50.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:50.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:50.625][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:50.626][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-09 16:02:50.627][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-09 16:02:50.629][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:50.631][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:50.633][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-09 16:02:50.634][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:50.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:50.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:50.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:50.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:50.694][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:50.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:50.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:50.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:50.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:50.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:50.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:50.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.788][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.788][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:50.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:50.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:50.790][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.809][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.812][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.818][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.828][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.829][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.835][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.836][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.851][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.859][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.875][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.876][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:50.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.878][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.879][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:50.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.909][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:50.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.912][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:50.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:50.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:50.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.918][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:50.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:51.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.158][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.159][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:51.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:51.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:51.161][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.185][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.191][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.194][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.200][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.201][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.232][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.242][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.242][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.244][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.245][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.246][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.272][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.281][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-09 16:02:51.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.495][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.496][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:51.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:51.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:51.498][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.502][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.537][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.538][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.543][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.550][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.568][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.574][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.577][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.586][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:51.587][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:51.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.591][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.606][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.615][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.622][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:51.735][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:51.735][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:51.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:51.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:51.751][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:51.753][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-09 16:02:51.754][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:51.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:51.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:51.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:51.816][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:51.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:51.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:51.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:51.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:51.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:51.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:51.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.907][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.908][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:51.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:51.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:51.910][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.914][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.930][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.938][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.941][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.948][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.949][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.954][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.955][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:51.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:51.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:51.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:51.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:51.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:51.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:51.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:51.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.978][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:51.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:51.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:51.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.988][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.989][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:51.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.991][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.992][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:51.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:51.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:51.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.996][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:51.997][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:51.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:51.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:51.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.015][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.022][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.030][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.035][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:52.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.248][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.249][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:52.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:52.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:52.256][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.266][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.287][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.293][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.294][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.297][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.300][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.306][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.326][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.335][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.336][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.338][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:52.339][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:52.340][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.343][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.350][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.365][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.368][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.375][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:52.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.574][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.574][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:52.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:52.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:52.577][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.586][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.603][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.618][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.636][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.642][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.651][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.652][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.655][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:52.656][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:52.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.660][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.688][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-09 16:02:52.798][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:52.799][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-09 16:02:52.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-09 16:02:52.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-09 16:02:52.813][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-08-09 16:02:52.815][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-09 16:02:52.816][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-09 16:02:52.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:52.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:52.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-09 16:02:52.875][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-09 16:02:52.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:52.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:52.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:52.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:52.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:52.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:52.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.967][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.968][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:52.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:52.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:52.970][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:52.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:52.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:52.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:52.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:52.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:52.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:52.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:52.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:52.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:52.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:52.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:52.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:52.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.996][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:52.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:52.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:52.999][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:52.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.004][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.005][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.010][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.015][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.034][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.038][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.044][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.045][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.048][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.049][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.070][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.076][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.085][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-09 16:02:53.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:53.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:53.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:53.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:53.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:53.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:53.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.299][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.300][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:53.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:53.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:53.302][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.341][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.342][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.346][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.352][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.368][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.375][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.384][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.385][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.387][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:53.388][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:53.389][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.413][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.414][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.422][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-09 16:02:53.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-09 16:02:53.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:53.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:53.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:53.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:53.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:53.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-09 16:02:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.629][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.629][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-09 16:02:53.630][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-09 16:02:53.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-09 16:02:53.632][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-09 16:02:53.632][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.636][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.642][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.655][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.661][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.671][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.672][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.678][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.684][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-09 16:02:53.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.703][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.706][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.711][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.713][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.714][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-09 16:02:53.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.716][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:53.717][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-09 16:02:53.718][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.721][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.737][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.753][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-09 16:02:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-09 16:02:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-09 16:02:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-09 16:02:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-09 16:02:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-09 16:02:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-09 16:02:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-09 16:02:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-09 16:02:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-09 16:02:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-09 16:02:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-09 16:02:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-09 16:02:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-09 16:02:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-09 16:02:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-09 16:02:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-09 16:02:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-09 16:02:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-09 16:02:53.872][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-09 16:02:53.873][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-09 16:02:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-09 16:02:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-09 16:02:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-09 16:02:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-09 16:02:53.890][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-09 16:02:53.891][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-09 16:02:53.892][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-09 16:02:53.892][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-09 16:02:53.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-09 16:02:53.894][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-09 16:02:53.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-09 16:02:53.895][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-09 16:02:53.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
> 
> proc.time()
   user  system elapsed 
 51.126   2.444  59.789

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)