Back to Long Tests report for BioC 3.23

This page was generated on 2025-11-22 23:55 -0500 (Sat, 22 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4829
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4603
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 23/28HostnameOS / ArchCHECK
MungeSumstats 1.19.1  (landing page)
Alan Murphy
Snapshot Date: 2025-11-22 09:55 -0500 (Sat, 22 Nov 2025)
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: devel
git_last_commit: d2204ce
git_last_commit_date: 2025-11-06 13:53:48 -0500 (Thu, 06 Nov 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for MungeSumstats on lconway

To the developers/maintainers of the MungeSumstats package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MungeSumstats
Version: 1.19.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no MungeSumstats_1.19.1.tar.gz
StartedAt: 2025-11-22 16:08:31 -0500 (Sat, 22 Nov 2025)
EndedAt: 2025-11-22 16:08:44 -0500 (Sat, 22 Nov 2025)
EllapsedTime: 12.5 seconds
RetCode: 1
Status:   ERROR  
CheckDir: MungeSumstats.Rcheck
Warnings: NA

Tests output


'R CMD check' output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no MungeSumstats_1.19.1.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc-longtests/meat/MungeSumstats.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘MungeSumstats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MungeSumstats’ version ‘1.19.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available:
  'SNPlocs.Hsapiens.dbSNP155.GRCh37',
  'SNPlocs.Hsapiens.dbSNP155.GRCh38'

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.23-bioc-longtests/meat/MungeSumstats.Rcheck/00check.log’
for details.

Installation output