H. Pagès
| Snapshot Date: 2026-03-26 13:40 -0400 (Thu, 26 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/txdbmaker |
| git_branch: devel |
| git_last_commit: 1cec29d |
| git_last_commit_date: 2025-12-08 20:01:59 -0400 (Mon, 08 Dec 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-27 11:33 -0400 (Fri, 27 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4880 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4577 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2296/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| txdbmaker 1.7.3 (landing page) H. Pagès
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for txdbmaker in R Universe. | ||||||||||||||
|
To the developers/maintainers of the txdbmaker package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/txdbmaker.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: txdbmaker |
| Version: 1.7.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data txdbmaker |
| StartedAt: 2026-03-26 17:58:52 -0400 (Thu, 26 Mar 2026) |
| EndedAt: 2026-03-26 17:59:16 -0400 (Thu, 26 Mar 2026) |
| EllapsedTime: 24.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data txdbmaker
###
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* checking for file ‘txdbmaker/DESCRIPTION’ ... OK
* preparing ‘txdbmaker’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘txdbmaker.Rmd’ using rmarkdown
Quitting from txdbmaker.Rmd:66-71 [supportedUCSCtables]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to connect: TLS/SSL error: SSL is required, but the server does not support it
---
Backtrace:
▆
1. └─txdbmaker::makeTxDbFromUCSC(genome = "mm9", tablename = "knownGene")
2. └─txdbmaker:::.fetch_UCSC_txtable(genome, tablename, transcript_ids = transcript_ids)
3. └─UCSC.utils::UCSC_dbselect(...)
4. ├─DBI::dbConnect(...)
5. └─DBI::dbConnect(...)
6. └─RMariaDB (local) .local(drv, ...)
7. └─RMariaDB:::connection_create(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'txdbmaker.Rmd' failed with diagnostics:
Failed to connect: TLS/SSL error: SSL is required, but the server does not support it
--- failed re-building ‘txdbmaker.Rmd’
SUMMARY: processing the following file failed:
‘txdbmaker.Rmd’
Error: Vignette re-building failed.
Execution halted