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This page was generated on 2025-09-20 12:06 -0400 (Sat, 20 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4814
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4603
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4547
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2119/2333HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
structToolbox 1.21.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2025-09-19 13:45 -0400 (Fri, 19 Sep 2025)
git_url: https://git.bioconductor.org/packages/structToolbox
git_branch: devel
git_last_commit: 36d5ff1
git_last_commit_date: 2025-04-15 11:54:06 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for structToolbox on kjohnson3

To the developers/maintainers of the structToolbox package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/structToolbox.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: structToolbox
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings structToolbox_1.21.0.tar.gz
StartedAt: 2025-09-19 22:02:10 -0400 (Fri, 19 Sep 2025)
EndedAt: 2025-09-19 22:05:02 -0400 (Fri, 19 Sep 2025)
EllapsedTime: 171.9 seconds
RetCode: 0
Status:   OK  
CheckDir: structToolbox.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings structToolbox_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/structToolbox.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘structToolbox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘structToolbox’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘structToolbox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

structToolbox.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL structToolbox
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘structToolbox’ ...
** this is package ‘structToolbox’ version ‘1.21.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (structToolbox)

Tests output

structToolbox.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ggplot2)
> library(structToolbox)
Loading required package: struct
> 
> test_check("structToolbox")
[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]

[ FAIL 0 | WARN 6 | SKIP 0 | PASS 166 ]
> 
> proc.time()
   user  system elapsed 
 58.648   0.627  60.252 

Example timings

structToolbox.Rcheck/structToolbox-Ex.timings

nameusersystemelapsed
ANOVA0.0660.0030.072
AUC0.5870.0240.621
DFA0.0550.0010.056
DatasetExperiment_boxplot0.3850.0190.408
DatasetExperiment_dist0.6000.0250.635
DatasetExperiment_factor_boxplot0.0990.0010.109
DatasetExperiment_heatmap0.1860.0200.210
HCA0.0250.0010.036
HSD0.0830.0040.090
HSDEM0.1140.0060.122
MTBLS79_DatasetExperiment0.0000.0000.001
OPLSDA0.0040.0010.004
OPLSR0.0020.0000.003
PCA0.0020.0000.001
PLSDA0.0030.0000.004
PLSR0.0030.0010.003
SVM0.0060.0000.007
as_data_frame0.0380.0000.038
autoscale0.0210.0000.022
balanced_accuracy0.5060.0050.525
blank_filter0.1130.0060.119
blank_filter_hist000
bootstrap0.0030.0000.003
calculate0.0010.0000.002
chart_plot0.0080.0010.008
classical_lsq0.0880.0000.091
compare_dist1.9090.0852.075
confounders_clsq0.8230.0040.847
confounders_lsq_barchart0.9250.0060.952
confounders_lsq_boxplot0.9160.0050.966
constant_sum_norm0.0020.0000.003
corr_coef0.0730.0000.080
dfa_scores_plot0.3010.0020.315
dratio_filter0.0820.0010.089
equal_split0.0330.0000.034
feature_boxplot0.0070.0000.008
feature_profile0.1620.0040.171
feature_profile_array0.2000.0010.203
filter_by_name0.0090.0000.010
filter_na_count0.3260.0170.355
filter_smeta0.0170.0000.017
fisher_exact2.7770.0122.854
fold_change3.2510.0313.287
fold_change_int4.6330.0054.679
fold_change_plot0.0020.0010.003
forward_selection_by_rank1.8680.0721.963
fs_line2.2210.0702.373
glog_opt_plot0.1670.0010.174
glog_transform0.0890.0010.093
grid_search_1d1.1510.0741.307
gs_line000
hca_dendrogram0.0010.0000.000
kfold_xval1.0780.0071.177
kfoldxcv_grid1.1660.0091.263
kfoldxcv_metric0.0010.0000.000
knn_impute0.0030.0000.004
kw_p_hist000
kw_rank_sum0.0460.0040.054
linear_model0.0090.0000.009
log_transform0.0020.0000.002
mean_centre0.0010.0000.001
mean_of_medians0.0330.0000.034
mixed_effect0.0580.0000.065
model_apply0.0070.0010.007
model_predict0.0210.0000.022
model_reverse0.0100.0010.009
model_train0.0170.0000.018
mv_boxplot0.1670.0100.179
mv_feature_filter0.0390.0010.039
mv_feature_filter_hist000
mv_histogram0.1330.0030.136
mv_sample_filter0.0030.0000.004
mv_sample_filter_hist0.0010.0000.000
nroot_transform0.0020.0000.002
ontology_cache000
pairs_filter0.0030.0010.002
pareto_scale0.0170.0000.016
pca_biplot0.0040.0000.004
pca_correlation_plot0.0020.0000.002
pca_dstat_plot0.0030.0000.003
pca_loadings_plot0.0020.0000.002
pca_scores_plot0.2330.0030.269
pca_scree_plot0.0020.0000.002
permutation_test0.0030.0000.003
permutation_test_plot0.0010.0000.001
permute_sample_order0.0020.0000.002
pls_regcoeff_plot0.1580.0020.176
pls_scores_plot0.2740.0030.277
pls_vip_plot0.1600.0010.166
plsda_feature_importance_plot0.2930.0020.315
plsda_predicted_plot0.1900.0030.215
plsda_roc_plot0.4040.0030.456
plsr_cook_dist0.0020.0000.003
plsr_prediction_plot0.0020.0000.002
plsr_qq_plot0.0010.0000.002
plsr_residual_hist0.0010.0000.002
pqn_norm0.0990.0010.113
pqn_norm_hist0.0000.0000.001
prop_na0.0030.0000.003
r_squared000
resample0.0050.0000.004
resample_chart0.0010.0000.001
rsd_filter0.0030.0000.004
rsd_filter_hist000
run0.0090.0000.009
sb_corr0.0080.0000.008
scatter_chart0.1780.0010.189
split_data0.0030.0000.002
stratified_split0.0330.0000.033
svm_plot_2d0.2700.0090.294
tSNE0.0080.0000.008
tSNE_scatter0.0020.0000.002
tic_chart0.1090.0020.117
ttest0.0070.0000.006
vec_norm000
wilcox_p_hist0.0000.0000.001
wilcox_test0.0060.0010.006