Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-18 12:07 -0400 (Sat, 18 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 |
lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4632 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1918/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scGraphVerse 0.99.19 (landing page) Francesco Cecere
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the scGraphVerse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scGraphVerse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: scGraphVerse |
Version: 0.99.19 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL scGraphVerse |
StartedAt: 2025-10-16 21:34:12 -0000 (Thu, 16 Oct 2025) |
EndedAt: 2025-10-16 21:34:53 -0000 (Thu, 16 Oct 2025) |
EllapsedTime: 40.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL scGraphVerse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘scGraphVerse’ ... ** this is package ‘scGraphVerse’ version ‘0.99.19’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regTree.c -o regTree.o regTree.c: In function ‘findBestSplit’: regTree.c:232:15: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable] 232 | int last, lc, nl, nr, npopl, npopr; | ^~ regTree.c: In function ‘predictRegTree’: regTree.c:418:19: warning: unused variable ‘cbestsplit’ [-Wunused-variable] 418 | int i, k, m, *cbestsplit, s; | ^~~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:71:30: warning: unused variable ‘nodexts’ [-Wunused-variable] 71 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ regrf.c:71:22: warning: variable ‘nodex’ set but not used [-Wunused-but-set-variable] 71 | int *in, *nind, *nodex, *nodexts; | ^~~~~ regrf.c:69:10: warning: variable ‘oobpair’ set but not used [-Wunused-but-set-variable] 69 | int *oobpair, varImp, localImp, *varUsed, kk; | ^~~~~~~ regrf.c:67:61: warning: variable ‘nPerm’ set but not used [-Wunused-but-set-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~~ regrf.c:67:31: warning: unused variable ‘jout’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~ regrf.c:67:22: warning: unused variable ‘nOOB’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~ regrf.c:67:15: warning: unused variable ‘mr’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~ regrf.c:65:36: warning: unused variable ‘ytree’ [-Wunused-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~~~ regrf.c:65:30: warning: variable ‘ytr’ set but not used [-Wunused-but-set-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~ regrf.c:65:18: warning: variable ‘xtmp’ set but not used [-Wunused-but-set-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~~ regrf.c:63:58: warning: variable ‘resOOB’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~ regrf.c:63:50: warning: unused variable ‘delta’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~ regrf.c:63:38: warning: unused variable ‘ooberrperm’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~~~~~ regrf.c:63:30: warning: variable ‘ooberr’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~ regrf.c:63:18: warning: unused variable ‘resid’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~ regrf.c:63:12: warning: variable ‘errb’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~ regrf.c:62:53: warning: unused variable ‘r’ [-Wunused-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^ regrf.c:62:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^~~~~~ regrf.c:62:12: warning: unused variable ‘errts’ [-Wunused-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o scGraphVerse.so init.o regTree.o regrf.o -L/home/biocbuild/R/R-4.5.0/lib -lR installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-scGraphVerse/00new/scGraphVerse/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scGraphVerse)