Yue Cao
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/scFeatures |
| git_branch: devel |
| git_last_commit: 85a7253 |
| git_last_commit_date: 2026-04-28 08:59:42 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1923/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scFeatures 1.13.0 (landing page) Yue Cao
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for scFeatures in R Universe. | ||||||||||||||
|
To the developers/maintainers of the scFeatures package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scFeatures.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: scFeatures |
| Version: 1.13.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scFeatures |
| StartedAt: 2026-05-05 05:48:04 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 05:50:09 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 125.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scFeatures
###
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* checking for file ‘scFeatures/DESCRIPTION’ ... OK
* preparing ‘scFeatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘scFeatures_overview.Rmd’ using rmarkdown
Quitting from scFeatures_overview.Rmd:169-178 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'clusterProfiler'
---
Backtrace:
▆
1. └─scFeatures::run_association_study_report(scfeatures_result, output_folder)
2. ├─rmarkdown::render(...)
3. │ └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
4. │ └─knitr:::process_file(text, output)
5. │ ├─xfun:::handle_error(...)
6. │ ├─base::withCallingHandlers(...)
7. │ └─knitr:::process_group(group)
8. │ └─knitr:::call_block(x)
9. │ └─knitr:::block_exec(params)
10. │ └─knitr:::eng_r(options)
11. │ ├─knitr:::in_input_dir(...)
12. │ │ └─knitr:::in_dir(input_dir(), expr)
13. │ └─knitr (local) evaluate(...)
14. │ └─evaluate::evaluate(...)
15. │ ├─base::withRestarts(...)
16. │ │ └─base (local) withRestartList(expr, restarts)
17. │ │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
18. │ │ │ └─base (local) doWithOneRestart(return(expr), restart)
19. │ │ └─base (local) withRestartList(expr, restarts[-nr])
20. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
21. │ │ └─base (local) doWithOneRestart(return(expr), restart)
22. │ ├─evaluate:::with_handlers(...)
23. │ │ ├─base::eval(call)
24. │ │ │ └─base::eval(call)
25. │ │ └─base::withCallingHandlers(...)
26. │ ├─base::withVisible(eval(expr, envir))
27. │ └─base::eval(expr, envir)
28. │ └─base::eval(expr, envir)
29. └─base::library(clusterProfiler)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scFeatures_overview.Rmd' failed with diagnostics:
there is no package called 'clusterProfiler'
--- failed re-building ‘scFeatures_overview.Rmd’
SUMMARY: processing the following file failed:
‘scFeatures_overview.Rmd’
Error: Vignette re-building failed.
Execution halted