Multiple platform build/check report for BioC 3.23 - CHECK results for scFeatures on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4826
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4561
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4562
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for scFeatures on lconway

To the developers/maintainers of the scFeatures package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scFeatures.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scFeatures

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:scFeatures.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings scFeatures_1.11.0.tar.gz

StartedAt: 2025-11-18 05:24:50 -0500 (Tue, 18 Nov 2025)

EndedAt: 2025-11-18 05:24:57 -0500 (Tue, 18 Nov 2025)

EllapsedTime: 6.9 seconds

RetCode: 1

Status: ERROR

CheckDir: scFeatures.Rcheck

Warnings: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:scFeatures.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings scFeatures_1.11.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/scFeatures.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘scFeatures/DESCRIPTION’ ... OK
* this is package ‘scFeatures’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scFeatures’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/scFeatures.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/scFeatures.Rcheck/00check.log’
for details.

Installation output

scFeatures.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL scFeatures
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’
* installing *source* package ‘scFeatures’ ...
** this is package ‘scFeatures’ version ‘1.11.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
ℹ /Users/biocbuild/Library/Caches/org.R-project.R/R/BulkSignalR is corrupted. It will be deleted and downloaded again.
Warning: download failed
  web resource path: 'https://partage-dev.montp.inserm.fr:9192/CBSB/SignalR/resources/gobp.rds'
  local file path: '/Users/biocbuild/Library/Caches/org.R-project.R/R/BulkSignalR/resources/c73642ddb429_gobp.rds'
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_disk()`:
! Transferred a partial file [partage-dev.montp.inserm.fr]:
end of response with 1278486 bytes missing
Warning: bfcadd() failed; resource removed
  rid: BFC1
  fpath: 'https://partage-dev.montp.inserm.fr:9192/CBSB/SignalR/resources/gobp.rds'
  reason: download failed
Error: .onLoad failed in loadNamespace() for 'BulkSignalR', details:
  call: .util_download(x, rid[i], proxy, progress, config, "bfcadd()", 
  error: bfcadd() failed; see warnings()
Execution halted
ERROR: lazy loading failed for package ‘scFeatures’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/scFeatures’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library/scFeatures’

CHECK results for scFeatures on lconway

Summary

Command output

Installation output

Tests output

Example timings