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This page was generated on 2025-11-01 11:33 -0400 (Sat, 01 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4774
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1835/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rtracklayer 1.71.0  (landing page)
Michael Lawrence
Snapshot Date: 2025-10-31 13:40 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/rtracklayer
git_branch: devel
git_last_commit: 65cde22
git_last_commit_date: 2025-10-29 10:00:29 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for rtracklayer on nebbiolo1

To the developers/maintainers of the rtracklayer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rtracklayer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rtracklayer
Version: 1.71.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rtracklayer
StartedAt: 2025-10-31 19:54:09 -0400 (Fri, 31 Oct 2025)
EndedAt: 2025-10-31 19:54:59 -0400 (Fri, 31 Oct 2025)
EllapsedTime: 50.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rtracklayer
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* checking for file ‘rtracklayer/DESCRIPTION’ ... OK
* preparing ‘rtracklayer’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘rtracklayer.Rnw’ using Sweave

Error: processing vignette 'rtracklayer.Rnw' failed with diagnostics:
 chunk 2 (label = rtl-init) 
Error in library("humanStemCell") : 
  there is no package called ‘humanStemCell’

--- failed re-building ‘rtracklayer.Rnw’

SUMMARY: processing the following file failed:
  ‘rtracklayer.Rnw’

Error: Vignette re-building failed.
Execution halted