| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-01 11:32 -0400 (Sat, 01 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4774 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1725/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| recountmethylation 1.21.0 (landing page) Sean K Maden
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the recountmethylation package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recountmethylation.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: recountmethylation |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation |
| StartedAt: 2025-10-31 19:42:43 -0400 (Fri, 31 Oct 2025) |
| EndedAt: 2025-10-31 19:43:30 -0400 (Fri, 31 Oct 2025) |
| EllapsedTime: 47.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation
###
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* checking for file ‘recountmethylation/DESCRIPTION’ ... OK
* preparing ‘recountmethylation’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘cpg_probe_annotations.Rmd’ using rmarkdown
Quitting from cpg_probe_annotations.Rmd:27-31 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `FUN()`:
! there is no package called 'minfiData'
---
Backtrace:
▆
1. └─base::sapply(libv, library, character.only = TRUE)
2. └─base::lapply(X = X, FUN = FUN, ...)
3. └─base (local) FUN(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cpg_probe_annotations.Rmd' failed with diagnostics:
there is no package called 'minfiData'
--- failed re-building ‘cpg_probe_annotations.Rmd’
--- re-building ‘exporting_saving_data.Rmd’ using rmarkdown
Quitting from exporting_saving_data.Rmd:32-36 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `FUN()`:
! there is no package called 'minfiData'
---
Backtrace:
▆
1. ├─BiocGenerics::sapply(libv, library, character.only = TRUE)
2. └─base::sapply(libv, library, character.only = TRUE)
3. └─base::lapply(X = X, FUN = FUN, ...)
4. └─base (local) FUN(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'exporting_saving_data.Rmd' failed with diagnostics:
there is no package called 'minfiData'
--- failed re-building ‘exporting_saving_data.Rmd’
--- re-building ‘recountmethylation_data_analyses.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_data_analyses.Rmd’
--- re-building ‘recountmethylation_glint.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_glint.Rmd’
--- re-building ‘recountmethylation_pwrewas.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_pwrewas.Rmd’
--- re-building ‘recountmethylation_search_index.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_search_index.Rmd’
--- re-building ‘recountmethylation_users_guide.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_users_guide.Rmd’
SUMMARY: processing the following files failed:
‘cpg_probe_annotations.Rmd’ ‘exporting_saving_data.Rmd’
Error: Vignette re-building failed.
Execution halted