Back to Build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1720/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rebook 1.21.0  (landing page)
Aaron Lun
Snapshot Date: 2025-10-30 13:40 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/rebook
git_branch: devel
git_last_commit: e92cb4e
git_last_commit_date: 2025-10-29 11:01:27 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped


BUILD results for rebook on nebbiolo1

To the developers/maintainers of the rebook package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rebook.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rebook
Version: 1.21.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rebook
StartedAt: 2025-10-30 18:37:08 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 18:37:17 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rebook
###
##############################################################################
##############################################################################


* checking for file ‘rebook/DESCRIPTION’ ... OK
* preparing ‘rebook’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘userguide.Rmd’ using rmarkdown

Quitting from userguide.Rmd:147-150 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `packageVersion()`:
! there is no package called 'OSCA.workflows'
---
Backtrace:
    ▆
 1. └─rebook::extractFromPackage(...)
 2.   ├─dir.expiry::lockDirectory(work.dir, exclusive = !file.exists(work.dir))
 3.   │ └─base::dirname(path)
 4.   └─rebook::bookCache(package)
 5.     └─utils::packageVersion(package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'userguide.Rmd' failed with diagnostics:
there is no package called 'OSCA.workflows'
--- failed re-building ‘userguide.Rmd’

SUMMARY: processing the following file failed:
  ‘userguide.Rmd’

Error: Vignette re-building failed.
Execution halted