Diego Diez
| Snapshot Date: 2026-03-06 13:40 -0500 (Fri, 06 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/rTRM |
| git_branch: devel |
| git_last_commit: deb123f |
| git_last_commit_date: 2025-10-29 10:15:20 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1865/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rTRM 1.49.0 (landing page) Diego Diez
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for rTRM in R Universe. | ||||||||||||||
|
To the developers/maintainers of the rTRM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rTRM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rTRM |
| Version: 1.49.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM |
| StartedAt: 2026-03-06 16:30:45 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 16:30:59 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 14.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
###
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* checking for file ‘rTRM/DESCRIPTION’ ... OK
* preparing ‘rTRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
2026-03-06 16:30:54.914 R[25286:112723847] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpVgD8UA/Rbuild5b9f699fc288/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-2-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpVgD8UA/Rbuild5b9f699fc288/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-2-2.png" but not available.
Read 8734 items
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpVgD8UA/Rbuild5b9f699fc288/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpVgD8UA/Rbuild5b9f699fc288/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-16-2.png" but not available.
Quitting from Introduction.Rmd:264-274 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'MotifDb'
---
Backtrace:
▆
1. └─base::library(MotifDb)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
there is no package called 'MotifDb'
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted