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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data puma
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* checking for file ‘puma/DESCRIPTION’ ... OK
* preparing ‘puma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘puma.Rnw’ using Sweave
Loading required package: oligo
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect,
    is.element, setdiff, setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, saveRDS, table, tapply,
    unique, unsplit, which.max, which.min

Loading required package: oligoClasses
Welcome to oligoClasses version 1.73.0
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: XVector
Loading required package: Seqinfo

Attaching package: ‘Biostrings’

The following object is masked from ‘package:base’:

    strsplit

============================================================
Welcome to oligo version 1.75.0
============================================================
Loading required package: mclust
Package 'mclust' version 6.1.1
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: pd.hg.u95av2
Attempting to obtain 'pd.hg.u95av2' from BioConductor website.
Checking to see if your internet connection works...
Package 'pd.hg.u95av2' was not found in the BioConductor repository.
The 'pdInfoBuilder' package can often be used in situations like this.
Warning in data(eset_gmoExon) : data set ‘eset_gmoExon’ not found
Warning in data(eset_gmhta) : data set ‘eset_gmhta’ not found
Loading required package: limma

Attaching package: ‘limma’

The following object is masked from ‘package:mclust’:

    logsumexp

The following object is masked from ‘package:oligo’:

    backgroundCorrect

The following object is masked from ‘package:BiocGenerics’:

    plotMA

Warning in contrasts.fit(fit, contrast.matrix) :
  row names of contrasts don't match col names of coefficients

Error: processing vignette 'puma.Rnw' failed with diagnostics:
 chunk 54 
Error in (function (cond)  : 
  error in evaluating the argument 'object' in selecting a method for function 'probeNames': there is no package called ‘pd.hg.u95av2’

--- failed re-building ‘puma.Rnw’

SUMMARY: processing the following file failed:
  ‘puma.Rnw’

Error: Vignette re-building failed.
Execution halted