##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data plotgardener
###
##############################################################################
##############################################################################


* checking for file ‘plotgardener/DESCRIPTION’ ... OK
* preparing ‘plotgardener’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘plotgardener’ ...
** this is package ‘plotgardener’ version ‘1.17.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c checkRow.cpp -o checkRow.o
checkRow.cpp:19:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
      if (((v[rowCol] == j) &
          ~^~~~~~~~~~~~~~~~~~
                            &&
checkRow.cpp:19:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
checkRow.cpp:20:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:22:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          ((start <= v[0]) & (stop >= v[1]))))){
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                           &&
checkRow.cpp:22:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                               ||
checkRow.cpp:20:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:21:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          ((stop >= v[0]) & (stop <= v[1])) |
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                          &&
checkRow.cpp:21:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                            &&
checkRow.cpp:20:13: note: cast one or both operands to int to silence this warning
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rebinBigwig.cpp -o rebinBigwig.o
In file included from rebinBigwig.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp.h:58:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:64:13: error: use of undeclared identifier 'R_nrow'
            return R_nrow( Parent::get__() );
                   ^
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:92:59: note: in instantiation of member function 'Rcpp::DataFrame_Impl<Rcpp::PreserveStorage>::nrow' requested here
        inline int nrows() const { return DataFrame_Impl::nrow(); }
                                                          ^
rebinBigwig.cpp:13:33: note: in instantiation of member function 'Rcpp::DataFrame_Impl<Rcpp::PreserveStorage>::nrows' requested here
  NumericVector max_scores(bins.nrows());
                                ^
1 error generated.
make: *** [rebinBigwig.o] Error 1
ERROR: compilation failed for package ‘plotgardener’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpYtsDTm/Rinst12db8306d5f7e/plotgardener’
      -----------------------------------
ERROR: package installation failed