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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1502/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
omicsPrint 1.29.0  (landing page)
Davy Cats
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/omicsPrint
git_branch: devel
git_last_commit: 713fd19
git_last_commit_date: 2025-04-15 11:16:31 -0400 (Tue, 15 Apr 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for omicsPrint on kjohnson3

To the developers/maintainers of the omicsPrint package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/omicsPrint.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: omicsPrint
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data omicsPrint
StartedAt: 2025-10-26 17:25:39 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 17:28:00 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 141.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data omicsPrint
###
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* checking for file ‘omicsPrint/DESCRIPTION’ ... OK
* preparing ‘omicsPrint’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘omicsPrint.Rmd’ using rmarkdown
2025-10-26 17:25:51.888 R[70228:550789414] XType: Using static font registry.
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100940/matrix/GSE100940_series_matrix.txt.gz'

Quitting from omicsPrint.Rmd:250-261 [downloadretry]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100940/matrix/GSE100940_series_matrix.txt.gz'
---
Backtrace:
    ▆
 1. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'omicsPrint.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100940/matrix/GSE100940_series_matrix.txt.gz'
--- failed re-building ‘omicsPrint.Rmd’

SUMMARY: processing the following file failed:
  ‘omicsPrint.Rmd’

Error: Vignette re-building failed.
Execution halted